Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20667
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 28 1.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.2
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 26 4.8
SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces pom... 26 4.8
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 26 6.3
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 6.3
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 6.3
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 26 6.3
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 26 6.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.3
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +2
Query: 503 QVHVSANVEYARYYVSFIIQFQFHRALCQLAGEHAAGDPNKKLVDCDIYQSVAAGNALA 679
+V + + +Y ++Y+ ++QF+ L +L G+ +G ++ V +Y G A+A
Sbjct: 921 EVRLGKSDDYDKWYIDILVQFREEEGLQKLTGQRQSG--GERSVSTIMYLLSLQGLAIA 977
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +2
Query: 32 TPPPGTSLMVKILGSNSARQSITNTSRPPTTRWGTSSTTCSTGINPLCSGTERTKVSTKR 211
T PP TS V + ++ NTS P T+ +S+T T L + T T S
Sbjct: 1652 TSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLN 1711
Query: 212 SGT 220
S T
Sbjct: 1712 SST 1714
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Frame = +2
Query: 110 RPPTTRWGTSSTTCS--------TGINPLCSGTERTKVST 205
RP TT W + S +CS TGI C+ E+T ST
Sbjct: 15 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGST 54
>SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 190
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = -1
Query: 174 HNGLIPVLQVVLDVPHLVVGGL---EVFVIDC-RALFDPKIFTIKEVP 43
++G + V+ V+DV +VGG+ EV + +C R++ D K VP
Sbjct: 66 YDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVP 113
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 345 LPFAYTLDLFRYGVFRRKTLPEDYNCHYWKLRE-QLQGVEPPVNR 476
+P AY + RYG RR+T+P H + + QLQ + P N+
Sbjct: 133 VPLAYCNEKDRYGSQRRETVPLKSALHELRDEQVQLQCRQAPSNQ 177
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 488 LRRRSQVHVSANVEYARYYVSFIIQFQFHRALCQLAGEHAA 610
L +++Q H+ A Y++ ++ F LCQ EHA+
Sbjct: 365 LEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHAS 405
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 32 TPPPGTSLMVKILGSNSARQSITNTSRPPTTRWGTSSTTC--STGINPLCSGTERTKVST 205
T PP TS+ + + T T+ PPTT +++T +T +N T V+T
Sbjct: 83 TVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNT 142
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 342 FLPFAYTLDLFRYGVFRRKTLP 407
FL +TL L +YG F R TLP
Sbjct: 329 FLMDDFTLSLTQYGAFYRGTLP 350
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 6.3
Identities = 26/85 (30%), Positives = 36/85 (42%)
Frame = +2
Query: 5 SRRIEKSFVTPPPGTSLMVKILGSNSARQSITNTSRPPTTRWGTSSTTCSTGINPLCSGT 184
SR VTPP TS + + S RQS+ + R ST+ S+GI+P S
Sbjct: 493 SRPPSPGIVTPPQRTSPSFFVSPTESTRQSL------DSRRSFEHSTSSSSGISPSHSSA 546
Query: 185 ERTKVSTKRSGTR*LSRCRHRNISS 259
+S + S S HR S+
Sbjct: 547 SLAHLS-QASNPNGSSSAPHRPTSA 570
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 8.3
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 35 PPPGTSLMVKILGSNSARQSITNTSRPPTTRWGTSSTTCSTGINPLCSGT 184
PP TS + S + TN+S PTT ++S T ST I P + T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT---STSCTTSTSIPPTGNST 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,407
Number of Sequences: 5004
Number of extensions: 55542
Number of successful extensions: 201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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