Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20667
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0416 + 25042937-25043350,25044038-25044238,25044343-250445...    30   1.6  
07_01_0056 + 428297-428332,428574-430127,430209-430274                 29   2.8  
01_01_0467 - 3446243-3446254,3446331-3446420,3446544-3446816,344...    29   5.0  
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688           25   6.0  
04_03_0313 + 14233049-14234362,14234558-14235523                       28   6.6  
07_03_0958 + 22881718-22881999,22882114-22883880                       28   8.7  
01_06_0637 + 30763657-30763858,30765600-30766261                       28   8.7  

>04_04_0416 +
           25042937-25043350,25044038-25044238,25044343-25044525,
           25044975-25045084,25045317-25045376,25045620-25045911,
           25046780-25046967,25047275-25048149,25048846-25049805,
           25050025-25050068,25050860-25050925,25051176-25051364
          Length = 1193

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 335 LVYSHLIKLIDLCLFVLGIARGQ--SDPTRCFGDDTERAIVSPTASWKP 195
           ++  HL K +D CL +LG A+G   SDP RC G    +++  P+ S  P
Sbjct: 611 VITEHLFKEVD-CL-LLGAAQGLVLSDPFRCCGSSKFKSVNFPSISVVP 657


>07_01_0056 + 428297-428332,428574-430127,430209-430274
          Length = 551

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +2

Query: 89  QSITNTSRPPTTRWGTSSTTCSTGINPLCSGTERTKVSTKRSGTR*LSRCRHRNIS 256
           +S     RP   R G  S+T S   +P    +++ KVS K+S T+   R RH ++S
Sbjct: 21  RSSRGKQRPKQRRRGRCSSTSSRSESPPRKRSKKLKVSDKKS-TKNKGRRRHHSLS 75


>01_01_0467 -
           3446243-3446254,3446331-3446420,3446544-3446816,
           3446898-3447066,3447579-3447646,3447890-3448074,
           3448683-3448806
          Length = 306

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 129 HLVVGGLEVFVIDCRALFDPKIFTIKEVPGGGVTNDFSI 13
           HL+V    + V  C  LF+ K F  + V G GV N  SI
Sbjct: 49  HLLVTFCSLHVALCMKLFEHKPFDARTVMGFGVLNGISI 87


>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
          Length = 308

 Score = 25.0 bits (52), Expect(2) = 6.0
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +2

Query: 101 NTSRPPTTRWGTSSTTCSTGIN-----PLCSGTERTKVSTKRSGTR*LSRCRHR 247
           +T +P +T   T   +  TG+N     P+C+ + R  +    +G    S C+HR
Sbjct: 34  STCKPWSTSLVTVELSSLTGLNDLLECPVCTNSMRPPILQCPNGHTICSNCKHR 87



 Score = 21.8 bits (44), Expect(2) = 6.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 332 QDRIPTVRIHPGPVPIRCVQKEDAAGRLQLP 424
           ++  PT R   G   IRC+  E  A  LQLP
Sbjct: 89  ENHCPTCRQELGN--IRCLALEKVAESLQLP 117


>04_03_0313 + 14233049-14234362,14234558-14235523
          Length = 759

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 208 AVGDTIALSVSSPKHLVGSDWPRAMPRTNRQRSI 309
           A G T+A S S+PK L G    RA PR ++ + I
Sbjct: 208 AAGGTVAKSASTPKRLKGES-SRAGPRISQSKCI 240


>07_03_0958 + 22881718-22881999,22882114-22883880
          Length = 682

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +2

Query: 488 LRRRSQVHVSANVEYARYYVSFIIQFQFHRALCQLAGE-HAAGDPNKKLVDCDIYQSVAA 664
           ++R S+       EYA   VS I + + HR L QL G  H  GD    L+   +Y+ V  
Sbjct: 356 VKRISKTSKQGRKEYASE-VSIISRLR-HRNLVQLVGWCHGRGD---FLL---VYELVPN 407

Query: 665 GNALANMLKMGSSKPWP 715
           G+  A++   G++ PWP
Sbjct: 408 GSLDAHLYGGGATLPWP 424


>01_06_0637 + 30763657-30763858,30765600-30766261
          Length = 287

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = +3

Query: 78  TVHDSRLRILPDHPPRDGAH-----PVLPAVPGSTRCVQGRSEPRFPRSGRGHDSSLGVV 242
           TVH S L  L D P    +H      +LP+   +  C    S  R  RSGRG +  L + 
Sbjct: 15  TVHGSAL--LEDGPNPLPSHLSPSPSLLPSPKRTPTCRLSPSSRRLDRSGRGREEGLNLK 72

Query: 243 TETSRRVGLATGDAED 290
           T  + R  L+T    D
Sbjct: 73  TPKAER-DLSTSIVND 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,914,697
Number of Sequences: 37544
Number of extensions: 426739
Number of successful extensions: 1499
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)