Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20667
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17540.1 68414.m02157 protein kinase-related similar to serin...    29   2.4  
At3g11850.2 68416.m01453 expressed protein contains Pfam profile...    29   4.1  
At3g11850.1 68416.m01452 expressed protein contains Pfam profile...    29   4.1  
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin...    28   7.2  
At5g54670.1 68418.m06807 kinesin-like protein C (KATC)                 27   9.6  
At3g62370.1 68416.m07006 expressed protein                             27   9.6  
At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containi...    27   9.6  
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila...    27   9.6  
At2g36220.1 68415.m04446 expressed protein                             27   9.6  

>At1g17540.1 68414.m02157 protein kinase-related similar to
           serine/threonine protein kinase Fen [Lycopersicon
           esculentum] GI:1809259
          Length = 733

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +3

Query: 108 PDHPPRDGAHPVLPAVPG---STRCVQGRSEP 194
           P HPP    HP + + PG   ST    GRS P
Sbjct: 178 PQHPPHPSKHPSMMSDPGPTSSTSSESGRSSP 209


>At3g11850.2 68416.m01453 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 504

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 111 DHPPRDGAHPVLPAVPGSTRCVQGRSEPRFPRSGRGHD-SSLGVVTETSRR 260
           ++PP D  H  +       R  Q  + P F +  RG D S  G+V E+ RR
Sbjct: 223 NYPPADSPHGRVHLKTLDRRLSQMETNPSFTQLNRGRDVSEKGMVGESPRR 273


>At3g11850.1 68416.m01452 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 504

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 111 DHPPRDGAHPVLPAVPGSTRCVQGRSEPRFPRSGRGHD-SSLGVVTETSRR 260
           ++PP D  H  +       R  Q  + P F +  RG D S  G+V E+ RR
Sbjct: 223 NYPPADSPHGRVHLKTLDRRLSQMETNPSFTQLNRGRDVSEKGMVGESPRR 273


>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
           motor protein - Ustilago maydis, PID:g2062750; identical
           to cDNA   MKRP2 mRNA for kinesin-related protein
           GI:16902293, kinesin-related protein [Arabidopsis
           thaliana] GI:16902294
          Length = 1055

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 80  SARQSITNTSRPPTTRWGTSSTTCSTGINPLCSGTERTKVSTKRSG 217
           ++  S T +SRPP+    TSS+  S  + P  + T  + + T  +G
Sbjct: 2   ASSSSRTRSSRPPSPASSTSSSHLSNRLIPRSNSTSASSLITSAAG 47


>At5g54670.1 68418.m06807 kinesin-like protein C (KATC)
          Length = 754

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
 Frame = +3

Query: 141 VLPAVPGSTRCVQGRSEPRFPRS----GRGHDSSLGVVTE--TSRRVGLATGDAEDEQTE 302
           V P +PG     +G++   +P S    GRG D          T  +V   T   ED  TE
Sbjct: 403 VRPLLPGENNGDEGKTIS-YPTSLEALGRGIDLMQNAQKHAFTFDKVFAPTASQEDVFTE 461

Query: 303 INQLYKMGIDKIAFLPFAY 359
           I+QL +  +D      FAY
Sbjct: 462 ISQLVQSALDGYKVCIFAY 480


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 681 FASALPAATLW*MSQSTSFLLGSPAACSPASWH 583
           F  + P  T+  + Q   F LGSPA  S A W+
Sbjct: 248 FEFSRPLRTMDRLQQDVQFTLGSPAKMSVAFWY 280


>At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (8 copies at C-terminus)
          Length = 961

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 96  LRILPDHPPRDGAHPVLPAVP--GSTRCVQGRSEPRFPRSGRGHDSSL 233
           +R++P +P    A PV+P+ P  G       RSE R+ + G   ++ +
Sbjct: 541 VRVMPQYPGSPLASPVMPSSPVGGMMSHFGRRSETRYHQQGPSRNTGI 588


>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
           to SP|P36175 O-sialoglycoprotein endopeptidase (EC
           3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
           contains Pfam profile PF00814: Glycoprotease family
          Length = 480

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 108 PDHPPRDGAHPVLPAVPGSTRCVQGRSEPRFPRSGRGHDSSLGVVTETS 254
           P   P D  + + P  P      +GRSE R  R+ R H S   ++   S
Sbjct: 425 PATEPEDYVYDLRPRWPLGEEYAKGRSEARSMRTARIHPSLTSIIRADS 473


>At2g36220.1 68415.m04446 expressed protein
          Length = 263

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 75  QTVHDSRLRILPDHPPR---DGAHPVLPAVPGSTRCVQGR 185
           +  HD R R+  +   +   DG  PV+P + G TR   GR
Sbjct: 214 RNTHDIRSRLPAEADEKSVFDGGEPVVPGLGGMTRFASGR 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,069,078
Number of Sequences: 28952
Number of extensions: 310018
Number of successful extensions: 947
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)