Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20666
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    28   1.8  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    27   3.1  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    27   3.1  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   5.4  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   9.5  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   9.5  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   9.5  

>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 648 EFQSLKLLEDRHV-FTTIEGMKPENVSKNRYRNVLPYD 758
           E Q L    DR+  ++T++ +   +  KNRY +++PY+
Sbjct: 271 EHQRLVSCSDRNSQWSTVDSLSNTSYKKNRYTDIVPYN 308


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 516 LMSDHRIRTKVFNKTHQVIELLTATYVVFVV 424
           +MS H I T    +T  +   LT +YVVF V
Sbjct: 162 MMSSHPIPTPAIQRTSSIPNPLTPSYVVFDV 192


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 243 LLNSLRTVETIAPAAGTASTEASMQADRAAGANT 142
           L+N+   V    P AGT    AS++AD A  +NT
Sbjct: 78  LMNNNMGVYFFGPEAGTEHDAASVKADHAIPSNT 111


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 288 RSREPHHGEREERFVLGPRISGASR 362
           RSR P++ ER +R  + PR    SR
Sbjct: 124 RSRSPYNDERSDRRSMSPRYRSRSR 148


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 540 PVSGTRLRAHDIDQKVQEMQGIEDRQKMECNTGFDGEFQSLKLLEDRH 683
           PV+ T  +  +  Q +++   I  R++ ECN   D     L+LL D +
Sbjct: 281 PVASTDEQLFNAHQLLEKKFEILKRERNECNAKIDELQDKLELLTDAY 328


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 260 NGST-VLCQPKKPRASSWRKGRTVRSWSENLRRIPVNTCCLSES 388
           NG+T V    K P   +   GR VR W +     P++T   SE+
Sbjct: 367 NGATQVKWNYKNPHILASSHGRLVRIWDDRYGSAPLHTIKTSEN 410


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 25   RSRVCLQLT*RDLSKFYKKYFSGEDLSDVER*SKVEP 135
            R  V  QL+ R   ++YKK++ GE ++     + +EP
Sbjct: 918  RDNVSPQLSDRKKLRWYKKFYLGELINKTRHCTFIEP 954


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,835
Number of Sequences: 5004
Number of extensions: 70336
Number of successful extensions: 234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)