Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20666
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0665 + 5001599-5003149 31 1.4
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 29 4.3
07_03_0171 + 14687791-14687898,14688465-14688550,14689474-146895... 29 5.7
11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398... 28 7.5
06_03_0283 - 19148158-19148574 28 7.5
03_01_0534 + 3996479-3997458,3997938-3998265 28 7.5
10_08_1037 - 22477358-22478752 28 9.9
09_01_0019 + 403078-404211 28 9.9
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353... 28 9.9
>07_01_0665 + 5001599-5003149
Length = 516
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +1
Query: 328 SFLVRESQAHPGEYVLSVRVRGRVSHVLIRRQHNKYDVGSGEQFDDLVGLIEHFRSYPMI 507
SFL R+ GEY+ VR GR + V RQ + +G+ + D G E S+ +
Sbjct: 166 SFLERDRDVVLGEYLPHVRREGRAAMVR-NRQRKLFTNLAGDTWGDDGGWCESVWSHVVF 224
Query: 508 GHQETY 525
H +T+
Sbjct: 225 EHPKTF 230
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 166 RQGSRRQHSEPAQPWIIFRHHSSLLH*NIFYKTWISLST*VVNK 35
R +R +PAQP I++ H + LH + W +S+ V NK
Sbjct: 259 RTAIQRFVQDPAQPAILYNHDNEFLH---YQDDWYIISSKVENK 299
>07_03_0171 +
14687791-14687898,14688465-14688550,14689474-14689546,
14689661-14689741,14690010-14690073,14690673-14690760,
14690843-14690927,14692190-14692228
Length = 207
Score = 28.7 bits (61), Expect = 5.7
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +2
Query: 125 RLSRLGVLAPAALSACMDASVLAVPAAGAIVSTVLKELSKAFMPKNGSTVLCQPKKPRAS 304
RL+RL +PA+ S+ A+ P + + ++ S F K LC KP
Sbjct: 11 RLARLLADSPASPSSAAAAAAAVEPQL-RVDALARRDYSSVFRIKR----LCFGNKPECR 65
Query: 305 SWRKGRTVRSW---SENLR 352
+W+ G ++R+ SENL+
Sbjct: 66 TWKHGTSLRTLFRRSENLQ 84
>11_01_0514 -
3985204-3985266,3985920-3986061,3986144-3986276,
3986703-3986817,3987496-3987549,3987787-3987912,
3989179-3989319,3989470-3989552,3989643-3989733,
3990318-3990405,3992705-3992832
Length = 387
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 633 TGFDGEFQSLKLLEDRHVFTTIEGMKPENVSKNRYRNVLPYDQS 764
T ++ Q ++ FT + P N KNRY +V+P+D++
Sbjct: 65 TPYNDHIQDIQTAFQTGKFTAAQN--PANREKNRYSDVMPFDET 106
>06_03_0283 - 19148158-19148574
Length = 138
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 206 LQPGLRARRHPCRPTGQPAP 147
L P R RRHPC QP P
Sbjct: 6 LPPARRHRRHPCMEPSQPQP 25
>03_01_0534 + 3996479-3997458,3997938-3998265
Length = 435
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 134 RLGVLAPAALSACMDASVLAVPAAGAIVSTVLKELSKAFMPKNGST 271
RLGV PAA +A A ++ A +V T + +S+ M + ST
Sbjct: 123 RLGVSEPAATAAASAAGGVSAAIAAQVVWTPVDVISQRLMVQTSST 168
>10_08_1037 - 22477358-22478752
Length = 464
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Frame = -1
Query: 245 PCSTP*EPWRRLH---LQPGLRARRHP-------CRPTGQPAPTLRAGS 129
P STP P RRLH PGLR P C P P+P R GS
Sbjct: 125 PPSTPTPPIRRLHALPFLPGLRLASPPRPIAPPCCSPPPIPSPVHRHGS 173
>09_01_0019 + 403078-404211
Length = 377
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 554 QTKSSRHRPESTGDAGNRRSTK 619
+ K+SRHR S G + +RRSTK
Sbjct: 214 EKKTSRHRSSSRGRSKHRRSTK 235
>03_01_0459 +
3533718-3533916,3535009-3535150,3535290-3535410,
3535513-3535575,3535677-3535823
Length = 223
Score = 27.9 bits (59), Expect = 9.9
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +1
Query: 253 AKKWFHGVMSAKEAESLIMEKGKNGSFLVRESQAHPGEYVLSVRVRGRVSHVL-IRRQHN 429
+KK+ G A SL E G ++ AHP E +V+ +V+ V + Q+
Sbjct: 93 SKKYSGGKAKNATANSLKREYGPKLKEHMKYCDAHPEEIDKLAKVKAQVTEVKGVMMQNI 152
Query: 430 KYDVGSGEQFDDLVGLIEHFRS 495
+ + GE+ + LV E RS
Sbjct: 153 EKVLDRGEKIELLVDKTEDLRS 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,614,887
Number of Sequences: 37544
Number of extensions: 502654
Number of successful extensions: 1662
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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