Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20666
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   2.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.6  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -1

Query: 512 CPIIGYERKCSIRPTRSSNCSPLPTSYLLC 423
           CP +         P R  N  PLPT  + C
Sbjct: 14  CPDLDNVTMPETTPRRKKNKKPLPTECVFC 43


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 499 PMIGHQETYCVSCS 540
           P +GH +  CV+CS
Sbjct: 380 PAMGHWQMSCVACS 393


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 576 DQKVQEMQGIEDRQKMECNTGFDGEFQS 659
           DQ++    G+ D  ++E  T  +G+F S
Sbjct: 223 DQRINYHFGMTDNSRLEPGTNKNGKFFS 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,606
Number of Sequences: 438
Number of extensions: 4939
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)