Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20666
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21560.1 68414.m02696 expressed protein                             31   0.89 
At5g03230.1 68418.m00271 expressed protein contains Pfam profile...    29   3.6  
At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to ...    29   3.6  
At4g30520.1 68417.m04333 leucine-rich repeat family protein / pr...    28   6.2  
At2g17550.1 68415.m02031 expressed protein                             28   6.2  
At2g19190.1 68415.m02239 light-responsive receptor protein kinas...    28   8.3  
At1g64790.1 68414.m07346 translational activator family protein ...    28   8.3  

>At1g21560.1 68414.m02696 expressed protein
          Length = 399

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 400 SHVLIRRQHNKYDVGSGEQFDDLVGLIEHFRSY 498
           SHV    QHN  D    E F+D + L E +RSY
Sbjct: 180 SHVRRNSQHNNGDASEKENFEDDIVLDEVYRSY 212


>At5g03230.1 68418.m00271 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 166

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 569 RHRPESTGDAGNRRSTKNG 625
           R +P  TGD+GNR  TK G
Sbjct: 59  RRKPTKTGDSGNREITKTG 77


>At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to CXC
           domain protein TSO1 [Arabidopsis thaliana] GI:7767425
          Length = 695

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -3

Query: 291 FFG*HNTVEPFFGMKALLNSLRTVETIAPAAGTASTEASMQADRAAGANTPSRLNLGLSF 112
           FF  HN+V+    +++L  S    E + P     + EAS++ +      T S L   + F
Sbjct: 73  FFRCHNSVDRSKHLESLDGSAVKGEVVVPLVEDLNKEASLEDEEETSVETSSELPQIMKF 132

Query: 111 D 109
           D
Sbjct: 133 D 133


>At4g30520.1 68417.m04333 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 648

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 133 AQPWIIFRHHSSLLH*NIFYKTWISLST*VVNK 35
           A+ W    +HS   H NI +KT  SLST  V++
Sbjct: 578 AERWAASHNHSHFYHANISFKTISSLSTTSVSR 610


>At2g17550.1 68415.m02031 expressed protein
          Length = 765

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 498 SDDRTSGDVLRLLQPVSGTRLRAHDIDQK-VQEMQGIEDRQ-KMECNTGFDGEFQSLKLL 671
           S D  +    RL   VS    +A +I+Q+ V + + +  R  K   +    G      LL
Sbjct: 350 SHDSVTKSSSRLRPTVSDAAKQAEEINQEDVSKKESLSPRNLKRSLSAPVSGTSFGKLLL 409

Query: 672 EDRHVFTTIEGMK 710
           EDRHV T  + M+
Sbjct: 410 EDRHVLTGAQIMR 422


>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
           senescence-responsive receptor-like serine/threonine
           kinase, putative (SIRK) similar to light repressible
           receptor protein kinase [Arabidopsis thaliana]
           gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
           Protein kinase domain and PF00560: Leucine Rich Repeat
          Length = 876

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 340 RESQAHPGEYVLSVRVRGRVSHVLIRRQHNKYDVGSGEQFDDL-VGLIEH 486
           +  + H  ++V S+   G +  ++ +R   +YDVGS  +  ++ +   EH
Sbjct: 778 KTEKVHISDHVRSILANGDIRGIVDQRLRERYDVGSAWKMSEIALACTEH 827


>At1g64790.1 68414.m07346 translational activator family protein
           similar to HsGCN1 [Homo sapiens] GI:2282576
          Length = 2440

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 492 TKVFNKTHQVIELLTATYVVFVVLSSDKDVANSTSDSD 379
           TK+F  T Q+   L   +  F+ ++ D+ V++ TSD+D
Sbjct: 468 TKIFLATSQLATTLLDEFSDFLSITGDQIVSSRTSDAD 505


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,743,712
Number of Sequences: 28952
Number of extensions: 382057
Number of successful extensions: 1168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)