Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20665
(707 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;... 112 9e-24
UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34; E... 110 3e-23
UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7; Sa... 98 2e-19
UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep: F... 95 2e-18
UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2; Oligoh... 95 2e-18
UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2; Bilate... 93 5e-18
UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1; Lodder... 92 1e-17
UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamo... 91 2e-17
UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1; ... 91 3e-17
UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus ... 90 4e-17
UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putati... 87 3e-16
UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2; Tricho... 87 3e-16
UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2; Ca... 87 4e-16
UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lambli... 86 9e-16
UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n... 84 3e-15
UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative... 83 7e-15
UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5 (36... 81 3e-14
UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=... 80 5e-14
UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51; E... 80 5e-14
UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2 homo... 80 6e-14
UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putati... 79 8e-14
UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1; Tricho... 79 8e-14
UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161, w... 79 1e-13
UniRef50_Q5UQ72 Cluster: Putative replication factor C small sub... 78 2e-13
UniRef50_P34429 Cluster: Putative replication factor C subunit 5... 77 3e-13
UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5; ... 77 6e-13
UniRef50_O57852 Cluster: Replication factor C small subunit (RFC... 76 1e-12
UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia lam... 72 2e-11
UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa group... 71 2e-11
UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus N... 71 2e-11
UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lambl... 71 3e-11
UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15; D... 71 3e-11
UniRef50_Q9GR09 Cluster: Replication factor C3; n=9; Aconoidasid... 71 4e-11
UniRef50_Q2UJ68 Cluster: Replication factor C; n=15; Pezizomycot... 71 4e-11
UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kD... 70 6e-11
UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=1... 70 6e-11
UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2... 70 6e-11
UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;... 69 9e-11
UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5... 69 9e-11
UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces... 69 1e-10
UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1) ... 67 3e-10
UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6; Pl... 67 5e-10
UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putati... 67 5e-10
UniRef50_Q5UP47 Cluster: Putative replication factor C small sub... 66 1e-09
UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4... 65 2e-09
UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6; Pl... 64 2e-09
UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus ... 64 4e-09
UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=1... 63 6e-09
UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella ve... 62 1e-08
UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103; ... 61 3e-08
UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1; ... 60 4e-08
UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus v... 60 5e-08
UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1; Aspe... 60 7e-08
UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1... 59 9e-08
UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC... 59 9e-08
UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putati... 58 2e-07
UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC... 57 4e-07
UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8; Eu... 56 1e-06
UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;... 55 2e-06
UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, wh... 55 2e-06
UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1... 54 3e-06
UniRef50_A6DLE8 Cluster: DNA polymerase III, gamma and tau subun... 54 3e-06
UniRef50_Q4UIQ4 Cluster: Replication factor C subunit, putative;... 53 6e-06
UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC... 52 1e-05
UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;... 50 4e-05
UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44... 50 6e-05
UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3; ... 50 7e-05
UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and ... 50 7e-05
UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and ... 49 1e-04
UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64; E... 49 1e-04
UniRef50_Q7UQ66 Cluster: DNA polymerase III gamma and tau subuni... 48 2e-04
UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and ... 48 2e-04
UniRef50_Q5UQ47 Cluster: Putative replication factor C small sub... 48 2e-04
UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1; ... 47 4e-04
UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subun... 47 5e-04
UniRef50_Q8RDE3 Cluster: ATPase involved in DNA replication; n=3... 46 0.001
UniRef50_Q2RZH6 Cluster: DNA polymerase III, subunits gamma and ... 46 0.001
UniRef50_Q6F0D9 Cluster: DNA polymerase III gamma and tau subuni... 46 0.001
UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and ... 46 0.001
UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subuni... 45 0.002
UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and ... 45 0.002
UniRef50_Q830L8 Cluster: DNA polymerase III, delta prime subunit... 44 0.003
UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1; Ajello... 44 0.003
UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12; S... 44 0.003
UniRef50_Q8KCT6 Cluster: DNA polymerase III, gamma and tau subun... 44 0.004
UniRef50_Q8G0U2 Cluster: DNA polymerase III, delta prime subunit... 44 0.004
UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subuni... 44 0.004
UniRef50_A2BZ44 Cluster: DNA polymerase, gamma and tau subunits;... 44 0.004
UniRef50_A3CUW4 Cluster: Replication factor C; n=2; Methanomicro... 44 0.004
UniRef50_Q9RRS5 Cluster: DNA polymerase III, tau/gamma subunit; ... 44 0.005
UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subuni... 44 0.005
UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subuni... 43 0.006
UniRef50_Q11HZ8 Cluster: DNA polymerase III, delta prime subunit... 43 0.006
UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Re... 43 0.006
UniRef50_A3FQ95 Cluster: Replication factor C subunit 5, putativ... 43 0.006
UniRef50_A0CIK7 Cluster: Chromosome undetermined scaffold_19, wh... 43 0.006
UniRef50_Q67TJ5 Cluster: DNA polymerase III gamma and tau subuni... 43 0.009
UniRef50_A6SZH8 Cluster: DNA polymerase III delta' subunit; n=1;... 43 0.009
UniRef50_A0UX52 Cluster: DNA-directed DNA polymerase; n=1; Clost... 43 0.009
UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and ... 42 0.011
UniRef50_Q7QR65 Cluster: GLP_301_13398_14519; n=1; Giardia lambl... 42 0.015
UniRef50_UPI0000DAE388 Cluster: hypothetical protein Rgryl_01000... 42 0.020
UniRef50_Q181E8 Cluster: Putative DNA polymerase III, delta' sub... 42 0.020
UniRef50_A5NZD9 Cluster: DNA-directed DNA polymerase; n=2; Alpha... 42 0.020
UniRef50_Q8RDI6 Cluster: DNA polymerase III, gamma/tau subunits;... 41 0.026
UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subuni... 41 0.026
UniRef50_Q1YNM8 Cluster: DNA polymerase III, delta prime subunit... 41 0.026
UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit g... 41 0.026
UniRef50_Q1FL61 Cluster: DNA polymerase III, delta prime subunit... 41 0.026
UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and ... 41 0.034
UniRef50_A5UZ90 Cluster: DNA polymerase III, delta prime subunit... 41 0.034
UniRef50_A5FRM9 Cluster: DNA polymerase III, subunits gamma and ... 41 0.034
UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-l... 41 0.034
UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n... 40 0.045
UniRef50_Q1FKE1 Cluster: DNA polymerase III, subunits gamma and ... 40 0.045
UniRef50_Q1GTQ0 Cluster: DNA-directed DNA polymerase; n=1; Sphin... 40 0.060
UniRef50_A7HXT6 Cluster: ATPase involved in DNA replication; n=5... 40 0.060
UniRef50_Q22W14 Cluster: Replication factor C subunit, putative;... 40 0.060
UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36... 40 0.060
UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2... 40 0.060
UniRef50_Q8DLH4 Cluster: DNA polymerase III delta prime subunit;... 40 0.079
UniRef50_Q81W10 Cluster: DNA polymerase III, delta prime subunit... 40 0.079
UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau ... 40 0.079
UniRef50_Q1ATA7 Cluster: DNA polymerase III, subunits gamma and ... 40 0.079
UniRef50_Q0IE22 Cluster: DNA polymerase III, subunits gamma and ... 40 0.079
UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3; Cyano... 40 0.079
UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837, ... 40 0.079
UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subuni... 39 0.10
UniRef50_Q89LM6 Cluster: Bll4517 protein; n=11; Bradyrhizobiacea... 39 0.10
UniRef50_Q899U1 Cluster: DNA polymerase III subunits gamma and t... 39 0.10
UniRef50_O25419 Cluster: DNA polymerase III gamma and tau subuni... 39 0.10
UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and ... 39 0.10
UniRef50_A7HD56 Cluster: DNA polymerase III, delta prime subunit... 39 0.10
UniRef50_A6BZZ4 Cluster: DNA polymerase III, tau/gamma subunit; ... 39 0.10
UniRef50_Q5UZL1 Cluster: Replication factor C small subunit; n=2... 39 0.10
UniRef50_Q6FZU9 Cluster: DNA polymerase III, delta prime subunit... 39 0.14
UniRef50_Q67JB2 Cluster: DNA polymerase III delta' subunit; n=1;... 39 0.14
UniRef50_Q18C99 Cluster: DNA polymerase III subunit gamma/tau; n... 39 0.14
UniRef50_Q022F8 Cluster: DNA polymerase III, subunits gamma and ... 39 0.14
UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;... 39 0.14
UniRef50_A3DHB9 Cluster: DNA polymerase III, subunits gamma and ... 39 0.14
UniRef50_A0KKI0 Cluster: DNA polymerase III, delta' subunit; n=2... 39 0.14
UniRef50_Q5UQE8 Cluster: Putative replication factor C small sub... 39 0.14
UniRef50_O84338 Cluster: DNA Pol III Gamma and Tau; n=8; Chlamyd... 38 0.18
UniRef50_Q28SW9 Cluster: DNA-directed DNA polymerase; n=25; Rhod... 38 0.18
UniRef50_A6CH16 Cluster: DNA polymerase III gamma and tau subuni... 38 0.18
UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and ... 38 0.18
UniRef50_P09122 Cluster: DNA polymerase III subunit gamma/tau; n... 38 0.18
UniRef50_Q6MP27 Cluster: DNA polymerase III delta' subunit; n=1;... 38 0.24
UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n... 38 0.24
UniRef50_A4J0K7 Cluster: DNA polymerase III, delta prime subunit... 38 0.24
UniRef50_P47658 Cluster: DNA polymerase III subunit gamma/tau; n... 38 0.24
UniRef50_Q2S490 Cluster: Putative DNA polymerase III, delta' sub... 38 0.32
UniRef50_Q18U88 Cluster: DNA polymerase III, subunits gamma and ... 38 0.32
UniRef50_Q0ASK9 Cluster: DNA polymerase III, subunits gamma and ... 38 0.32
UniRef50_A0LM15 Cluster: DNA polymerase III, subunits gamma and ... 38 0.32
UniRef50_A0GXK7 Cluster: DNA polymerase III, subunits gamma and ... 38 0.32
UniRef50_Q661F8 Cluster: DNA polymerase III, subunits gamma and ... 37 0.42
UniRef50_Q2Y982 Cluster: DNA polymerase III, delta prime subunit... 37 0.42
UniRef50_Q2GDS0 Cluster: Putative DNA polymerase III, gamma/tau ... 37 0.42
UniRef50_Q87N27 Cluster: DNA polymerase III, delta prime subunit... 37 0.56
UniRef50_Q7VRB7 Cluster: DNA polymerase III subunit gamma; n=2; ... 37 0.56
UniRef50_Q74AW9 Cluster: DNA polymerase III, delta prime subunit... 37 0.56
UniRef50_Q7CZ44 Cluster: AGR_C_2759p; n=6; Rhizobiaceae|Rep: AGR... 37 0.56
UniRef50_Q4AHZ6 Cluster: DNA-directed DNA polymerase; n=1; Chlor... 37 0.56
UniRef50_Q0S8Z6 Cluster: DNA polymerase III subunit; n=12; Coryn... 37 0.56
UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1; Meth... 37 0.56
UniRef50_Q927D7 Cluster: DnaX protein; n=17; Bacillales|Rep: Dna... 36 0.74
UniRef50_Q8XHN4 Cluster: DNA polymerase III delta' subunit; n=3;... 36 0.74
UniRef50_Q7MUS1 Cluster: DNA polymerase III, gamma and tau subun... 36 0.74
UniRef50_Q2STA6 Cluster: DNA polymerase III gamma-tau subunits; ... 36 0.74
UniRef50_O67486 Cluster: Putative uncharacterized protein; n=1; ... 36 0.74
UniRef50_Q1K472 Cluster: DNA polymerase III, subunits gamma and ... 36 0.74
UniRef50_A6NU34 Cluster: Putative uncharacterized protein; n=1; ... 36 0.74
UniRef50_A5KMD2 Cluster: Putative uncharacterized protein; n=3; ... 36 0.74
UniRef50_A1W8D6 Cluster: DNA polymerase III, subunits gamma and ... 36 0.74
UniRef50_A0UY99 Cluster: DNA polymerase III, subunits gamma and ... 36 0.74
UniRef50_Q9KQI3 Cluster: DNA polymerase III, delta prime subunit... 36 0.98
UniRef50_Q5L3X6 Cluster: DNA-directed DNA polymerase III gamma a... 36 0.98
UniRef50_A7GZC8 Cluster: Protein EbsC; n=13; Campylobacter|Rep: ... 36 0.98
UniRef50_A1I9Q5 Cluster: DNA-directed DNA polymerase; n=1; Candi... 36 0.98
UniRef50_A0L8T4 Cluster: DNA polymerase III, delta prime subunit... 36 0.98
UniRef50_UPI0000499373 Cluster: activator 1 subunit; n=2; Entamo... 36 1.3
UniRef50_Q7NAN5 Cluster: DnaX; n=1; Mycoplasma gallisepticum|Rep... 36 1.3
UniRef50_Q74GZ9 Cluster: DNA polymerase III, gamma and tau subun... 36 1.3
UniRef50_Q6MDZ7 Cluster: Probable DNA-directed DNA polymerase II... 36 1.3
UniRef50_Q2LUA9 Cluster: DNA polymerase III, gamma subunit; n=1;... 36 1.3
UniRef50_Q2BG76 Cluster: DNA polymerase III subunit delta; n=1; ... 36 1.3
UniRef50_Q0GL66 Cluster: DNA polymerase III, subunits gamma and ... 36 1.3
UniRef50_Q043K3 Cluster: Helicase subunit of the Holliday juncti... 36 1.3
UniRef50_A4CK17 Cluster: DNA polymerase III subunit gamma/tau; n... 36 1.3
UniRef50_A0M2F5 Cluster: DNA polymerase III subunit gamma/tau; n... 36 1.3
UniRef50_UPI0000E0FA0C Cluster: DNA polymerase III subunit delta... 35 1.7
UniRef50_Q3AG11 Cluster: Putative DNA polymerase III, delta prim... 35 1.7
UniRef50_O84190 Cluster: DNA Pol III Gamma and Tau; n=4; Chlamyd... 35 1.7
UniRef50_Q1PVI5 Cluster: Similar to DNA polymerase III clamp loa... 35 1.7
UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and t... 35 1.7
UniRef50_A6QBX8 Cluster: DNA polymerase III, gamma/tau subunits;... 35 1.7
UniRef50_A3IDG6 Cluster: DNA polymerase III subunit delta'; n=1;... 35 1.7
UniRef50_P63976 Cluster: DNA polymerase III subunit gamma/tau; n... 35 1.7
UniRef50_Q8QNA1 Cluster: EsV-1-187; n=1; Ectocarpus siliculosus ... 35 2.3
UniRef50_Q6YPV8 Cluster: DNA polymerase III, gamma/tau subunit; ... 35 2.3
UniRef50_Q601S8 Cluster: DNA polymerase III gamma-tau subunits; ... 35 2.3
UniRef50_Q2GE30 Cluster: Putative uncharacterized protein; n=1; ... 35 2.3
UniRef50_Q03ZG9 Cluster: DNA polymerase III, gamma/tau subunit; ... 35 2.3
UniRef50_A4B798 Cluster: DNA polymerase III subunit delta; n=1; ... 35 2.3
UniRef50_Q4UBG2 Cluster: Replication factor c-related protein, p... 35 2.3
UniRef50_A0B6D7 Cluster: Replication factor C large subunit; n=1... 35 2.3
UniRef50_P37540 Cluster: DNA polymerase III subunit delta'; n=8;... 35 2.3
UniRef50_Q8DT16 Cluster: DNA polymerase III, gamma/tau subunit; ... 34 3.0
UniRef50_Q73K31 Cluster: DNA polymerase III, gamma and tau subun... 34 3.0
UniRef50_Q2RTP3 Cluster: DNA-directed DNA polymerase; n=1; Rhodo... 34 3.0
UniRef50_Q1MPV7 Cluster: DNA polymerase III, gamma/tau subunits;... 34 3.0
UniRef50_Q0B0W5 Cluster: DNA-directed DNA polymerase; n=1; Syntr... 34 3.0
UniRef50_A5IZC8 Cluster: DNA polymerase III subunit gamma and TA... 34 3.0
UniRef50_A5CF91 Cluster: DNA polymerase III gamma and tau chains... 34 3.0
UniRef50_Q9FK71 Cluster: Similarity to DNA polymerase III; n=3; ... 34 3.0
UniRef50_A6MVQ4 Cluster: DNA polymerase III; n=1; Rhodomonas sal... 34 3.0
UniRef50_Q9KT51 Cluster: DNA polymerase III, subunits gamma and ... 34 3.9
UniRef50_Q8A7B5 Cluster: DNA polymerase III subunit gamma/tau; n... 34 3.9
UniRef50_Q899F8 Cluster: DNA polymerase III delta subunit; n=1; ... 34 3.9
UniRef50_Q7V9L4 Cluster: DNA polymerase III gamma/tau subunit; n... 34 3.9
UniRef50_Q6KIL7 Cluster: DNA polymerase III subunit gamma and ta... 34 3.9
UniRef50_Q2SIX1 Cluster: DNA polymerase III, gamma/tau subunit; ... 34 3.9
UniRef50_Q41AZ0 Cluster: DNA-directed DNA polymerase; n=1; Exigu... 34 3.9
UniRef50_A7M2L2 Cluster: Putative uncharacterized protein; n=2; ... 34 3.9
UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and ... 34 3.9
UniRef50_Q4A6Z5 Cluster: DNA polymerase III gamma and tau subuni... 33 5.2
UniRef50_Q1QXJ7 Cluster: DNA polymerase III, subunits gamma and ... 33 5.2
UniRef50_Q2QW40 Cluster: ATPase, AAA family protein, expressed; ... 33 5.2
UniRef50_A2Q901 Cluster: Similarity to hypothetical ABC transpor... 33 5.2
UniRef50_A5YSV5 Cluster: Replication factor C small subunit II; ... 33 5.2
UniRef50_Q9PR58 Cluster: DNA polymerase III gamma-tau subunits; ... 33 6.9
UniRef50_Q82X62 Cluster: DnaX; DNA polymerase III (Subunits tau ... 33 6.9
UniRef50_O83970 Cluster: DNA polymerase III, subunits gamma and ... 33 6.9
UniRef50_A7INF3 Cluster: DNA-directed DNA polymerase; n=1; Xanth... 33 6.9
UniRef50_A6EHG2 Cluster: DNA polymerase III, tau and gamma subun... 33 6.9
UniRef50_A4B0N9 Cluster: DNA polymerase III subunits gamma and t... 33 6.9
UniRef50_A0CKH6 Cluster: Chromosome undetermined scaffold_2, who... 33 6.9
UniRef50_Q8Q084 Cluster: Replication factor C large subunit; n=4... 33 6.9
UniRef50_UPI0000DAE784 Cluster: hypothetical protein Rgryl_01001... 33 9.1
UniRef50_UPI000050FF03 Cluster: COG1530: Ribonucleases G and E; ... 33 9.1
UniRef50_UPI0000499AAD Cluster: activator 1 subunit; n=1; Entamo... 33 9.1
UniRef50_Q9ABG0 Cluster: DNA polymerase III, gamma and tau subun... 33 9.1
UniRef50_A6FHN9 Cluster: HolB; n=1; Moritella sp. PE36|Rep: HolB... 33 9.1
UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and ... 33 9.1
UniRef50_A4B943 Cluster: Putative uncharacterized protein; n=1; ... 33 9.1
UniRef50_A2RNZ7 Cluster: DNA polymerase III subunits gamma / tau... 33 9.1
UniRef50_A1SDH6 Cluster: DNA polymerase III, subunits gamma and ... 33 9.1
UniRef50_A4RWV3 Cluster: Predicted protein; n=8; Viridiplantae|R... 33 9.1
UniRef50_Q553E9 Cluster: Protein kinase, Atypical group; n=2; Di... 33 9.1
UniRef50_Q4MZF5 Cluster: Replication factor C large subunit, put... 33 9.1
>UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG8142-PA
- Apis mellifera
Length = 310
Score = 112 bits (269), Expect = 9e-24
Identities = 51/91 (56%), Positives = 63/91 (69%)
Frame = +2
Query: 2 GKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITS 181
G R DG+ CP +K+++LDEADSMT AAQAAL FCLICNYVSRII P+TS
Sbjct: 126 GMRDDGKSCPPFKIIVLDEADSMTGAAQAALRRTMEKESHSTRFCLICNYVSRIIEPLTS 185
Query: 182 RCSKFRFKPLARENVIKRLREICEAKTWMLV 274
RC+KFRFKPL +I+RL IC+ + +V
Sbjct: 186 RCTKFRFKPLGENKIIERLEYICKEEDLKIV 216
Score = 56.0 bits (129), Expect = 9e-07
Identities = 24/53 (45%), Positives = 38/53 (71%)
Frame = +3
Query: 510 LEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDLGCTLIMA 668
+EQLS ++ + LT+KQK I++K C +RLLDGG+E++QL ++ C +I A
Sbjct: 254 IEQLSERIIYSNELTDKQKALIADKLGECNYRLLDGGNEYIQLINICCGIIKA 306
Score = 35.5 bits (78), Expect = 1.3
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Frame = +1
Query: 403 LVPEKLVNEYLSI---KNYSELEEFVQNFLMRAYSASQL 510
+VP+K ++E + + +YS+ EEFV F++ AY+ SQ+
Sbjct: 215 IVPDKWLDELIDVCKTNHYSKAEEFVDQFMLEAYATSQV 253
>UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34;
Eukaryota|Rep: Replication factor C subunit 4 - Homo
sapiens (Human)
Length = 363
Score = 110 bits (265), Expect = 3e-23
Identities = 52/84 (61%), Positives = 63/84 (75%)
Frame = +2
Query: 2 GKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITS 181
G R+DG+PCP +K+VILDEADSMT+AAQAAL FCLICNYVSRII P+TS
Sbjct: 133 GSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTS 192
Query: 182 RCSKFRFKPLARENVIKRLREICE 253
RCSKFRFKPL+ + +RL +I +
Sbjct: 193 RCSKFRFKPLSDKIQQQRLLDIAK 216
Score = 33.5 bits (73), Expect = 5.2
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 531 VVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDLGCTLIMANNNP*C 686
VV +L++KQK I+EK A L DG E +QL L C +M + C
Sbjct: 313 VVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISL-CATVMQQLSQNC 363
>UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7;
Saccharomycetales|Rep: Replication factor C subunit 2 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 353
Score = 98.3 bits (234), Expect = 2e-19
Identities = 47/77 (61%), Positives = 52/77 (67%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
PCP YK++ILDEADSMT AQ+AL FCLICNYV+RII P+ SRCSKFRF
Sbjct: 130 PCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRF 189
Query: 203 KPLARENVIKRLREICE 253
K L N I RLR I E
Sbjct: 190 KALDASNAIDRLRFISE 206
>UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep:
F8K7.11 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 319
Score = 95.1 bits (226), Expect = 2e-18
Identities = 44/81 (54%), Positives = 53/81 (65%)
Frame = +2
Query: 8 RADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRC 187
R G PCPS+K++ILDEADSMT AQ AL F ICNY+SRII P+ SRC
Sbjct: 107 RQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 166
Query: 188 SKFRFKPLARENVIKRLREIC 250
+KFRFKPL+ E + R+ IC
Sbjct: 167 AKFRFKPLSEEVMSNRILHIC 187
>UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2;
Oligohymenophorea|Rep: ATPase, AAA family protein -
Tetrahymena thermophila SB210
Length = 373
Score = 94.7 bits (225), Expect = 2e-18
Identities = 41/78 (52%), Positives = 55/78 (70%)
Frame = +2
Query: 26 CPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFK 205
CP++K++ILDEADSMTT AQ+AL FC+ICNY+++II P+ SRC KFRFK
Sbjct: 145 CPNFKIIILDEADSMTTEAQSALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFRFK 204
Query: 206 PLARENVIKRLREICEAK 259
P+ E I +L EIC+ +
Sbjct: 205 PIPLEAQITKLEEICKTE 222
>UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2;
Bilateria|Rep: Clone ZZD636 mRNA sequence - Schistosoma
japonicum (Blood fluke)
Length = 364
Score = 93.5 bits (222), Expect = 5e-18
Identities = 46/77 (59%), Positives = 52/77 (67%)
Frame = +2
Query: 29 PSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKP 208
P YKL+ILDEADSMT AQAAL FCL CNYV+RII PITSRC+KFRF+P
Sbjct: 135 PPYKLIILDEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRP 194
Query: 209 LARENVIKRLREICEAK 259
L E RLR I +A+
Sbjct: 195 LDNEIARARLRYIADAE 211
Score = 44.8 bits (101), Expect = 0.002
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Frame = +1
Query: 253 SENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYG----------RITADGLIEVTG 402
+EN+ V + E L+ + C GDLR+ +T LQC +L IT+ L E
Sbjct: 210 AENLSVTD-ETLDHLLSLCRGDLRQGITMLQCVHQLIMSVDDSNSNSLSITSSELDEAAA 268
Query: 403 LVPEKLVNEYLSIK---NYSELEEFVQNFLMRAYSASQ 507
+VP ++ + N+ +L+ ++N L+ YSA Q
Sbjct: 269 VVPTDVIKSLVKTSENGNFDDLQVIIKNLLLEGYSAHQ 306
>UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Activator 1
41 kDa subunit - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 402
Score = 92.3 bits (219), Expect = 1e-17
Identities = 42/77 (54%), Positives = 52/77 (67%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
PCP YK++ILDEADSMT AQ+AL F L+CNY++RII P+ SRCSKFRF
Sbjct: 140 PCPPYKIIILDEADSMTNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRF 199
Query: 203 KPLARENVIKRLREICE 253
K L EN + RL+ I +
Sbjct: 200 KLLNNENSLNRLKYIAK 216
>UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: activator 1 subunit -
Entamoeba histolytica HM-1:IMSS
Length = 329
Score = 91.1 bits (216), Expect = 2e-17
Identities = 42/75 (56%), Positives = 51/75 (68%)
Frame = +2
Query: 29 PSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKP 208
P YKL+ILDE+D++T AQ AL FCLICNY+SRI+PPI+SRC KFRF
Sbjct: 103 PDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSA 162
Query: 209 LARENVIKRLREICE 253
L +E V RL+ ICE
Sbjct: 163 LPKEIVSNRLQMICE 177
>UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 411
Score = 90.6 bits (215), Expect = 3e-17
Identities = 40/80 (50%), Positives = 54/80 (67%)
Frame = +2
Query: 14 DGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSK 193
D CP +K+++LDEADSMT AQ+AL FCL+CNYV+RII P+ SRCSK
Sbjct: 151 DKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSK 210
Query: 194 FRFKPLARENVIKRLREICE 253
FRFK L + N ++R+ +I +
Sbjct: 211 FRFKSLDQGNAVRRVDDIAK 230
>UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-182 - Ectocarpus siliculosus virus 1
Length = 326
Score = 90.2 bits (214), Expect = 4e-17
Identities = 42/76 (55%), Positives = 52/76 (68%)
Frame = +2
Query: 26 CPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFK 205
CP +KLVILDEAD+MT AQ+AL FCL+CNYVS+II P+ SRC+KFRF
Sbjct: 102 CPPFKLVILDEADTMTADAQSALRRTMETHSVVTRFCLVCNYVSKIIAPLASRCAKFRFS 161
Query: 206 PLARENVIKRLREICE 253
LA +++ RL ICE
Sbjct: 162 TLAPKSMKGRLLHICE 177
Score = 33.9 bits (74), Expect = 3.9
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +1
Query: 283 ILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPEKL 420
+L+ V + GD+R A+ LQ + R+T + ++E+ G VPE++
Sbjct: 190 VLDAIVKSSRGDMRSAVNLLQTVSQ-QPRVTPESIVEIAGEVPERV 234
>UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
2, putative - Leishmania major
Length = 354
Score = 87.4 bits (207), Expect = 3e-16
Identities = 40/86 (46%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Frame = +2
Query: 8 RADGR--PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITS 181
++DG+ P P +KL+ILDEAD++ AQAAL FC++CNYVSRII PI S
Sbjct: 128 QSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIAS 187
Query: 182 RCSKFRFKPLARENVIKRLREICEAK 259
RC+K+RFKPL + + R+ + +A+
Sbjct: 188 RCAKYRFKPLVKSALYHRIEYVAQAE 213
Score = 38.7 bits (86), Expect = 0.14
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +1
Query: 295 AVDTCEG-DLRRALTALQCCQRLYGR-ITADGLIEVTGLVPEKLVNEYLSIKNYSELEEF 468
A+DT G DLR A+ LQ Q+ G ++ + + V+G VP ++ +YLS LEE
Sbjct: 224 ALDTVSGGDLRLAIMHLQSAQKAKGDDLSKEDFVSVSGSVPADVMQQYLSALFSHRLEEV 283
Query: 469 VQ 474
+Q
Sbjct: 284 IQ 285
>UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 87.4 bits (207), Expect = 3e-16
Identities = 43/73 (58%), Positives = 52/73 (71%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+VILDEADSMT+AAQ AL F +ICNYVS+II PI SRC+KFRFKPL
Sbjct: 107 FKIVILDEADSMTSAAQNALRRIIETYSSVTRFIIICNYVSKIIDPILSRCAKFRFKPLD 166
Query: 215 RENVIKRLREICE 253
R +I+RL +I E
Sbjct: 167 RPAIIERLHKIFE 179
>UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2;
Caenorhabditis|Rep: Replication factor C subunit 4 -
Caenorhabditis elegans
Length = 334
Score = 87.0 bits (206), Expect = 4e-16
Identities = 40/74 (54%), Positives = 51/74 (68%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K++ILDE D+MT AQAA+ F LICNYVSR+IPP+ SRC+KFRFK L
Sbjct: 120 KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPA 179
Query: 218 ENVIKRLREICEAK 259
E ++RLR IC+A+
Sbjct: 180 EIQVQRLRTICDAE 193
>UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_61_35037_36092 - Giardia lamblia
ATCC 50803
Length = 351
Score = 85.8 bits (203), Expect = 9e-16
Identities = 39/83 (46%), Positives = 52/83 (62%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
PCP ++++ILDEAD++T +QAAL FC+ICNY S+II PI SRC++F F
Sbjct: 108 PCPDFQVIILDEADALTRESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARFAF 167
Query: 203 KPLARENVIKRLREICEAKTWML 271
L R +I RL IC A+ L
Sbjct: 168 SSLPRPLIIDRLESICYAEMHQL 190
>UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n=2;
Cryptosporidium|Rep: Replication factor C like AAA
ATpase - Cryptosporidium parvum Iowa II
Length = 335
Score = 84.2 bits (199), Expect = 3e-15
Identities = 38/78 (48%), Positives = 53/78 (67%)
Frame = +2
Query: 17 GRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKF 196
G PS+K+VILDEA+ MT AQ+AL F +ICNY+S+II P+ SRC+KF
Sbjct: 110 GNLLPSWKIVILDEAEMMTADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLASRCAKF 169
Query: 197 RFKPLARENVIKRLREIC 250
RF+P++ + I+RL+ IC
Sbjct: 170 RFQPISANSQIERLKYIC 187
Score = 39.5 bits (88), Expect = 0.079
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +1
Query: 256 ENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYG---RITADGLIEVTGLVPEKLVN 426
E+V +G +L V+ +GDLRR + LQ L+G RI+ +++V+G+ P K++
Sbjct: 190 EDVSYEDG-VLETIVNLSQGDLRRGINILQSASELFGKDKRISMSSILDVSGVPPIKIIE 248
Query: 427 EYLS 438
++
Sbjct: 249 RIIN 252
>UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative;
n=1; Babesia bovis|Rep: Replication factor C3 protein,
putative - Babesia bovis
Length = 348
Score = 83.0 bits (196), Expect = 7e-15
Identities = 40/83 (48%), Positives = 53/83 (63%)
Frame = +2
Query: 11 ADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCS 190
+D P + KL+ILDEAD MT AAQ +L FCLICN+++RIIPPI SRC+
Sbjct: 108 SDSGPRTNLKLIILDEADQMTNAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCT 167
Query: 191 KFRFKPLARENVIKRLREICEAK 259
FRF PL + V +R +I +A+
Sbjct: 168 GFRFPPLKNDVVKRRTADIAKAE 190
>UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5
(36kDa), probable; n=2; Ostreococcus|Rep: Rfc5
replication factor C subunit 5 (36kDa), probable -
Ostreococcus tauri
Length = 341
Score = 80.6 bits (190), Expect = 3e-14
Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Frame = +2
Query: 20 RPCPS-YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKF 196
RP S +KLVI+DE DS+T AQ AL FCLICNY S+IIP I SRC+KF
Sbjct: 107 RPFSSAFKLVIMDECDSLTKDAQFALRRIMEKYAQHTRFCLICNYASKIIPAIQSRCTKF 166
Query: 197 RFKPLARENVIKRLREI 247
RF P+ E +++RLR +
Sbjct: 167 RFAPVPAEAMLQRLRHV 183
>UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=2;
Cryptosporidium|Rep: Replication factor RFC3 AAA+ ATpase
- Cryptosporidium parvum Iowa II
Length = 383
Score = 80.2 bits (189), Expect = 5e-14
Identities = 36/74 (48%), Positives = 48/74 (64%)
Frame = +2
Query: 26 CPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFK 205
C + KL+ILDEAD MT+ AQ AL FC+ICNYV++I P + SRC++FRF
Sbjct: 137 CENIKLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQSRCTRFRFS 196
Query: 206 PLARENVIKRLREI 247
PL E++ R+ EI
Sbjct: 197 PLPIEDIRNRISEI 210
>UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51;
Eukaryota|Rep: Replication factor C subunit 5 - Homo
sapiens (Human)
Length = 340
Score = 80.2 bits (189), Expect = 5e-14
Identities = 38/73 (52%), Positives = 48/73 (65%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+KLVILDEAD+MT AQ AL FCLICNY+S+IIP + SRC++FRF PL
Sbjct: 119 FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLT 178
Query: 215 RENVIKRLREICE 253
E ++ RL + E
Sbjct: 179 PELMVPRLEHVVE 191
Score = 33.9 bits (74), Expect = 3.9
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 256 ENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTG 402
E VD+ E + + V GD+RRAL LQ +G++T + + TG
Sbjct: 193 EKVDISE-DGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG 240
>UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2
homologue) , putative; n=3; Piroplasmida|Rep:
Replication factor C subunit (RPC2 homologue) , putative
- Theileria annulata
Length = 336
Score = 79.8 bits (188), Expect = 6e-14
Identities = 39/77 (50%), Positives = 48/77 (62%)
Frame = +2
Query: 20 RPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFR 199
R P+YK++ILDEAD +T AQAAL F LICNY+ +II PI SRCS F
Sbjct: 111 RVMPNYKMIILDEADMITADAQAALRRVIENYSSISRFILICNYLHKIIGPIYSRCSVFH 170
Query: 200 FKPLARENVIKRLREIC 250
FKP+ + I RL+ IC
Sbjct: 171 FKPIETNSQIDRLKYIC 187
>UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
3, putative - Leishmania infantum
Length = 364
Score = 79.4 bits (187), Expect = 8e-14
Identities = 35/79 (44%), Positives = 51/79 (64%)
Frame = +2
Query: 17 GRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKF 196
G P +KLVILDEAD M+ AQAAL FC++CN++++IIP + SRC++F
Sbjct: 126 GGPAAKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRF 185
Query: 197 RFKPLARENVIKRLREICE 253
RF P+ + ++ RLR + E
Sbjct: 186 RFAPVKKSAMMPRLRFVAE 204
>UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 79.4 bits (187), Expect = 8e-14
Identities = 38/77 (49%), Positives = 50/77 (64%)
Frame = +2
Query: 29 PSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKP 208
P KL+ILDE+D+MT AAQAAL F LICNY ++IP + SRC++FRF+P
Sbjct: 103 PKIKLIILDESDAMTGAAQAALRRIMEQFTSNVRFILICNYPEKLIPALRSRCTEFRFQP 162
Query: 209 LARENVIKRLREICEAK 259
L E+ K LR I +A+
Sbjct: 163 LPDEDAAKFLRHIADAE 179
>UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161,
whole genome shotgun sequence; n=2;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_161, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 340
Score = 79.0 bits (186), Expect = 1e-13
Identities = 37/74 (50%), Positives = 49/74 (66%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
S KLVILDEAD+MT AAQ AL FC ICN++S+IIP I SRC++F+FK +
Sbjct: 117 SIKLVILDEADAMTAAAQFALRRIIEKYAKTTRFCFICNHISQIIPAIQSRCTRFKFKQI 176
Query: 212 ARENVIKRLREICE 253
+ + R++ ICE
Sbjct: 177 SLDVASSRIKYICE 190
>UniRef50_Q5UQ72 Cluster: Putative replication factor C small
subunit L510; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L510 -
Mimivirus
Length = 363
Score = 78.2 bits (184), Expect = 2e-13
Identities = 40/91 (43%), Positives = 53/91 (58%)
Frame = +2
Query: 5 KRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSR 184
K DG PSYK++ILDEADSMT AQ AL FC ICNY+++I I SR
Sbjct: 103 KLEDGTIIPSYKIIILDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSR 162
Query: 185 CSKFRFKPLARENVIKRLREICEAKTWMLVK 277
CS FK L+ E ++++L +I ++ L K
Sbjct: 163 CSSVYFKKLSDECMVEKLNDISLKESMELPK 193
>UniRef50_P34429 Cluster: Putative replication factor C subunit 5;
n=2; Caenorhabditis|Rep: Putative replication factor C
subunit 5 - Caenorhabditis elegans
Length = 368
Score = 77.4 bits (182), Expect = 3e-13
Identities = 36/75 (48%), Positives = 49/75 (65%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+KLVILDEAD+MT AQ AL FC+ICNY++ I+P I SRC++FRF PL
Sbjct: 137 FKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLD 196
Query: 215 RENVIKRLREICEAK 259
++ ++ RL I E +
Sbjct: 197 QKLIVPRLEYIVETE 211
>UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5;
Fungi/Metazoa group|Rep: DNA replication factor,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 373
Score = 76.6 bits (180), Expect = 6e-13
Identities = 34/73 (46%), Positives = 48/73 (65%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+KLVILDEAD MT AAQ+AL FC++CNYV++I P I SRC++FRF PL
Sbjct: 152 FKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLP 211
Query: 215 RENVIKRLREICE 253
+ + ++ E+ +
Sbjct: 212 EKEIQVKVDEVVQ 224
>UniRef50_O57852 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Pho RFC intein]; n=8; Euryarchaeota|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Pho RFC intein] - Pyrococcus
horikoshii
Length = 855
Score = 75.8 bits (178), Expect = 1e-12
Identities = 37/74 (50%), Positives = 47/74 (63%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
S+K++ LDEAD++T AQ AL F L CNY S+II PI SRC+ FRF+PL
Sbjct: 637 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPL 696
Query: 212 ARENVIKRLREICE 253
E++ KRLR I E
Sbjct: 697 RDEDIAKRLRYIAE 710
>UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_574_161256_160291 - Giardia
lamblia ATCC 50803
Length = 321
Score = 71.7 bits (168), Expect = 2e-11
Identities = 31/75 (41%), Positives = 47/75 (62%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+VI+DE D M++ AQA+L FCL+CNY +++P I SRC FRF P+
Sbjct: 106 FKIVIMDECDHMSSVAQASLRRLMETSIKHARFCLLCNYPEKLLPAILSRCCAFRFLPVP 165
Query: 215 RENVIKRLREICEAK 259
RE+ + L +I +A+
Sbjct: 166 RESCLLMLEKIADAE 180
>UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa
group|Rep: Rfc4 protein - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 202
Score = 71.3 bits (167), Expect = 2e-11
Identities = 32/54 (59%), Positives = 38/54 (70%)
Frame = +2
Query: 2 GKRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRI 163
G R DG+ CP +K++ILDEADSMT+AAQAAL FCLICNYVSR+
Sbjct: 128 GTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRL 181
>UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Replication factor C
- Candidatus Nitrosopumilus maritimus SCM1
Length = 316
Score = 71.3 bits (167), Expect = 2e-11
Identities = 35/73 (47%), Positives = 46/73 (63%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K++ILDEAD MT+ AQ AL F LI N +S+II PI SRC+ F+F +
Sbjct: 104 FKIIILDEADEMTSDAQTALRRIIEDTAKICRFILIANNISKIIDPIQSRCATFKFTAVP 163
Query: 215 RENVIKRLREICE 253
E+VIKRL EI +
Sbjct: 164 EEDVIKRLEEIAK 176
>UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_177_25642_24674 - Giardia lamblia
ATCC 50803
Length = 322
Score = 70.9 bits (166), Expect = 3e-11
Identities = 34/77 (44%), Positives = 42/77 (54%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
P KLV LDE D+MT AAQ L FCL CN +S++I P+ SRC R
Sbjct: 99 PAGIQKLVFLDECDAMTEAAQQVLRRIMDDETGSTRFCLACNNISKVIEPVQSRCCVLRI 158
Query: 203 KPLARENVIKRLREICE 253
P + +IK L+EICE
Sbjct: 159 MPATQAELIKYLQEICE 175
>UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15;
Dikarya|Rep: Replication factor C subunit 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 340
Score = 70.9 bits (166), Expect = 3e-11
Identities = 30/71 (42%), Positives = 46/71 (64%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+KL+ILDEAD+MT AAQ AL FC++ NY ++ P + SRC++FRF+PL
Sbjct: 111 FKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLP 170
Query: 215 RENVIKRLREI 247
+E + +R+ +
Sbjct: 171 QEAIERRIANV 181
>UniRef50_Q9GR09 Cluster: Replication factor C3; n=9;
Aconoidasida|Rep: Replication factor C3 - Plasmodium
falciparum
Length = 344
Score = 70.5 bits (165), Expect = 4e-11
Identities = 33/74 (44%), Positives = 46/74 (62%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
KL+ILDEAD MT AQ A+ FCL+CNYV++I P I SRC+ FRF PL +
Sbjct: 116 KLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKK 175
Query: 218 ENVIKRLREICEAK 259
E + + +I +++
Sbjct: 176 EYMKNKALDIAKSE 189
>UniRef50_Q2UJ68 Cluster: Replication factor C; n=15;
Pezizomycotina|Rep: Replication factor C - Aspergillus
oryzae
Length = 398
Score = 70.5 bits (165), Expect = 4e-11
Identities = 31/70 (44%), Positives = 42/70 (60%)
Frame = +2
Query: 17 GRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKF 196
G SYKL+ILDEAD+MT AQ AL FC+I NY ++ P + SRC++F
Sbjct: 148 GSSLASYKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRF 207
Query: 197 RFKPLARENV 226
RF PL +++
Sbjct: 208 RFSPLKEQDI 217
>UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kDa
SUBUNIT; n=2; Microsporidia|Rep: REPLICATION FACTOR C
(ACTIVATOR 1) 37kDa SUBUNIT - Encephalitozoon cuniculi
Length = 309
Score = 69.7 bits (163), Expect = 6e-11
Identities = 33/75 (44%), Positives = 46/75 (61%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K++ILDEADSMTT AQ A+ F LICN ++I PI SRC+ RF +
Sbjct: 97 FKIIILDEADSMTTTAQQAMRRVMEIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIE 156
Query: 215 RENVIKRLREICEAK 259
+ ++KRL+EI E +
Sbjct: 157 QSVILKRLKEISEGE 171
Score = 40.7 bits (91), Expect = 0.034
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = +1
Query: 280 EILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPEKLVNEYLSIKNYSEL 459
E L+ V+ +GD+R++L LQ C G + D +I++ GL K + + L E+
Sbjct: 178 EALDLVVELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGLPSPKRIEKVLQRLLKREV 237
Query: 460 EEFVQNF 480
EE ++ F
Sbjct: 238 EEALEMF 244
>UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=18;
Thermoprotei|Rep: Replication factor C small subunit -
Sulfolobus solfataricus
Length = 330
Score = 69.7 bits (163), Expect = 6e-11
Identities = 34/68 (50%), Positives = 44/68 (64%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+V+LDEAD+MT AQ AL F L CNY+S+II PI SR + FRF PL
Sbjct: 106 FKVVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLK 165
Query: 215 RENVIKRL 238
+E+V+ RL
Sbjct: 166 KEDVVNRL 173
>UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2;
Methanobacteriaceae|Rep: Replication factor C small
subunit - Methanosphaera stadtmanae (strain DSM 3091)
Length = 321
Score = 69.7 bits (163), Expect = 6e-11
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
++++ LDE D+MT AQ AL F L CNY S+II PI SRC+ FRF P+
Sbjct: 100 FRIIFLDEVDNMTKDAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIK 159
Query: 215 RENVIKRLREI 247
N+IKRL+ I
Sbjct: 160 AANIIKRLKYI 170
>UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Activator 1 40 kDa
subunit - Entamoeba histolytica HM-1:IMSS
Length = 315
Score = 69.3 bits (162), Expect = 9e-11
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K+VILDEADSMTTAA AL F L CN +II PI SRC++ F+PL
Sbjct: 107 KIVILDEADSMTTAAFQALRRTMEIHSKTTRFVLACNTPEKIIEPIQSRCARLTFRPLGE 166
Query: 218 ENVIKRLREI--CE 253
E ++ R++EI CE
Sbjct: 167 EELMNRIKEIAHCE 180
Score = 33.5 bits (73), Expect = 5.2
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 256 ENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITAD 381
E VD+ E + + EGD+R+A+ ALQ C + G+IT +
Sbjct: 180 EGVDI-EDDAVKALEIVSEGDMRKAINALQTCAIIQGKITKE 220
>UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 325
Score = 69.3 bits (162), Expect = 9e-11
Identities = 33/71 (46%), Positives = 45/71 (63%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
Y+++ LDEAD++T+ AQ+AL F L CNY S+II PI SRC+ FRF PLA
Sbjct: 111 YRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLA 170
Query: 215 RENVIKRLREI 247
+ V + +R I
Sbjct: 171 DDAVAEEIRTI 181
>UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces
capsulatus NAm1|Rep: Activator 1 subunit 3 - Ajellomyces
capsulatus NAm1
Length = 366
Score = 68.5 bits (160), Expect = 1e-10
Identities = 30/74 (40%), Positives = 45/74 (60%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
++KL+ILDEAD+MT AQ AL FC+I NY ++ P + SRC++FRF PL
Sbjct: 169 AFKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPL 228
Query: 212 ARENVIKRLREICE 253
E++ + ++ E
Sbjct: 229 KEEDIRVLVDQVVE 242
>UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1)
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT -
Encephalitozoon cuniculi
Length = 305
Score = 67.3 bits (157), Expect = 3e-10
Identities = 35/75 (46%), Positives = 46/75 (61%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
KLVILDEAD M+ AQ AL FCLI N++ +II PI SRC+KFRF P+
Sbjct: 95 KLVILDEADMMSRDAQNALRRIIEDFSANTRFCLIANHLRKIISPILSRCTKFRFGPIG- 153
Query: 218 ENVIKRLREICEAKT 262
+ R+ EIC+ ++
Sbjct: 154 -DTENRIEEICKRES 167
>UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6;
Plasmodium|Rep: Replication factor C subunit 2 -
Plasmodium falciparum
Length = 330
Score = 66.9 bits (156), Expect = 5e-10
Identities = 34/75 (45%), Positives = 45/75 (60%)
Frame = +2
Query: 29 PSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKP 208
PS+KLV+LDEAD MT AQ+AL F LICNY+ +I PI SRCS +RF+
Sbjct: 111 PSWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQS 170
Query: 209 LARENVIKRLREICE 253
+ ++L IC+
Sbjct: 171 IPINIKKEKLLYICQ 185
Score = 52.8 bits (121), Expect = 8e-06
Identities = 26/92 (28%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Frame = +1
Query: 253 SENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPEKLVNEY 432
+EN+D+ + + L + ++T EGDLRRA++ LQ C + +IT + +++V+GL + +V +
Sbjct: 186 NENIDIVD-DALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPSDNIVYKI 244
Query: 433 L---SIKNYSELEEFVQNFLMRAYSASQLWNS 519
+ +K+ +E+ VQ+ + + + ++ S
Sbjct: 245 IDACKMKDLKLVEKTVQDIIEDGFDVAYIFKS 276
>UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
4, putative - Leishmania infantum
Length = 360
Score = 66.9 bits (156), Expect = 5e-10
Identities = 34/68 (50%), Positives = 42/68 (61%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+V+LDEADSMT AAQ AL F CN SRII PI SRC+ RFK L+
Sbjct: 138 HKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSRIIEPIQSRCAVVRFKKLS 197
Query: 215 RENVIKRL 238
+++KRL
Sbjct: 198 DADILKRL 205
Score = 38.3 bits (85), Expect = 0.18
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 310 EGDLRRALTALQCCQRLYGRITADGLIEVTG----LVPEKLVNEYLSIKNYSELEEFVQN 477
EGDLR+AL ALQ YG + AD + +V L+ E ++ ++ +N E +
Sbjct: 229 EGDLRQALNALQATHTGYGLVNADNVFKVCDQPHPLLVENVITACVTKRNIEEAHREMNR 288
Query: 478 FLMRAYS 498
L R Y+
Sbjct: 289 LLNRGYA 295
>UniRef50_Q5UP47 Cluster: Putative replication factor C small
subunit L499; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L499 -
Mimivirus
Length = 344
Score = 65.7 bits (153), Expect = 1e-09
Identities = 33/72 (45%), Positives = 41/72 (56%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+KLVILDE DSMT AQ L FCLICN + +I + SRC+ FRF PL
Sbjct: 121 FKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLN 180
Query: 215 RENVIKRLREIC 250
++ RL +IC
Sbjct: 181 ELDMHGRLSDIC 192
>UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4;
Thermoplasmatales|Rep: Replication factor C small
subunit - Thermoplasma volcanium
Length = 318
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/73 (43%), Positives = 42/73 (57%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K++ LDEAD +T AQAAL F CNY S+IIPPI SR RF+P+
Sbjct: 101 FKILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQ 160
Query: 215 RENVIKRLREICE 253
E + K+L EI +
Sbjct: 161 DEFIKKKLNEIAK 173
>UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6;
Plasmodium|Rep: Replication factor C subunit 4 -
Plasmodium falciparum
Length = 336
Score = 64.5 bits (150), Expect = 2e-09
Identities = 31/77 (40%), Positives = 45/77 (58%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
P +K++ILDE DSMTTAAQ +L F L CN +II + SRC+ R+
Sbjct: 111 PPGKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRY 170
Query: 203 KPLARENVIKRLREICE 253
L+ + V+KR+ +IC+
Sbjct: 171 FKLSDDQVLKRILKICD 187
>UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-224 - Ectocarpus siliculosus virus 1
Length = 324
Score = 63.7 bits (148), Expect = 4e-09
Identities = 31/76 (40%), Positives = 41/76 (53%)
Frame = +2
Query: 20 RPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFR 199
R + KLVILDEAD +T+ AQ AL FCL CNY+SR+ + SRC+ F
Sbjct: 99 RSTNALKLVILDEADGLTSCAQRALRHLIETTSGRARFCLCCNYISRLSSGLRSRCTSFS 158
Query: 200 FKPLARENVIKRLREI 247
F + + LRE+
Sbjct: 159 FSGIGNVQLAHTLREV 174
>UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=13;
cellular organisms|Rep: Replication factor C small
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 338
Score = 63.3 bits (147), Expect = 6e-09
Identities = 30/73 (41%), Positives = 46/73 (63%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K++ LDEAD++T+ AQ+AL F L CNY S+II PI SRC+ +RF+ L+
Sbjct: 112 FKIIFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLS 171
Query: 215 RENVIKRLREICE 253
+ + +RL I +
Sbjct: 172 DKAIRERLEYIAK 184
>UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 401
Score = 62.1 bits (144), Expect = 1e-08
Identities = 33/77 (42%), Positives = 41/77 (53%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
P +K++ILDEADSMT AQ AL F L CN +II I SRC+ R+
Sbjct: 148 PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNTSDKIIEAIQSRCAILRY 207
Query: 203 KPLARENVIKRLREICE 253
L V+ RL EIC+
Sbjct: 208 TRLTDAQVLTRLLEICD 224
>UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103;
Eukaryota|Rep: Replication factor C subunit 2 - Homo
sapiens (Human)
Length = 354
Score = 60.9 bits (141), Expect = 3e-08
Identities = 31/77 (40%), Positives = 40/77 (51%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
P +K++ILDEADSMT AQ AL F L CN +II PI SRC+ R+
Sbjct: 131 PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRY 190
Query: 203 KPLARENVIKRLREICE 253
L ++ RL + E
Sbjct: 191 TKLTDAQILTRLMNVIE 207
>UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 389
Score = 60.5 bits (140), Expect = 4e-08
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 10/86 (11%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXX----------FCLICNYVSRIIPPITS 181
S K+V+LDEAD+MT AQ AL F LICN+V++IIP + S
Sbjct: 216 SVKMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKHTRSTRFALICNHVNKIIPALQS 275
Query: 182 RCSKFRFKPLARENVIKRLREICEAK 259
RC++FRF PL +V +RL+ I +++
Sbjct: 276 RCTRFRFAPLDGTHVRERLKHIIQSE 301
Score = 54.4 bits (125), Expect = 3e-06
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXX----------FCLICNYVSRIIPPITS 181
S K+V+LDEAD+MT AQ AL F LICN+V++IIP + S
Sbjct: 126 SVKMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKHTRSTRFALICNHVNKIIPALQS 185
Query: 182 RCSKFRFKPLARENV 226
RC++FRF PL +V
Sbjct: 186 RCTRFRFAPLDGNHV 200
>UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-87 - Ectocarpus siliculosus virus 1
Length = 324
Score = 60.1 bits (139), Expect = 5e-08
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 RADGRPCPSY-KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSR 184
R P P+ K+V+LDEADSMT A AL F ++CN ++II PI SR
Sbjct: 96 RVGTEPTPTIAKIVVLDEADSMTPGAFQALRRIMDVYSSTTRFIIVCNNSTKIIEPIQSR 155
Query: 185 CSKFRFKPLARENVIKRLREICE 253
C+ RF + + R+R++C+
Sbjct: 156 CAILRFSKVDDAQLRLRIRQVCD 178
>UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1;
Aspergillus fumigatus|Rep: Replication factor C subunit
- Aspergillus fumigatus (Sartorya fumigata)
Length = 389
Score = 59.7 bits (138), Expect = 7e-08
Identities = 30/72 (41%), Positives = 42/72 (58%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
P +KLVILDEAD+M AQ AL FC+I N + +++P + SRC++ RF
Sbjct: 122 PYNMFKLVILDEADTMDHTAQMALRRIIEDYAAFTRFCIITNNIHKLLPALISRCARLRF 181
Query: 203 KPLARENVIKRL 238
PL R + I+ L
Sbjct: 182 PPL-RPSAIRTL 192
>UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1;
Cenarchaeum symbiosum|Rep: Replication factor C small
subunit - Cenarchaeum symbiosum
Length = 311
Score = 59.3 bits (137), Expect = 9e-08
Identities = 26/75 (34%), Positives = 44/75 (58%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K++ILDEAD MT AQ AL F ++ N +S+II PI SRC+ ++F +
Sbjct: 99 FKIIILDEADEMTADAQTALRRTIEDASKICRFIIVANNISKIIDPIQSRCAVYKFTSIP 158
Query: 215 RENVIKRLREICEAK 259
+ + +L++I + +
Sbjct: 159 EKEAMAQLKKIAKGE 173
>UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mkn RFC intein]; n=1; Methanopyrus kandleri|Rep:
Replication factor C small subunit (RFC small subunit)
(Clamp loader small subunit) [Contains: Mkn RFC intein]
- Methanopyrus kandleri
Length = 635
Score = 59.3 bits (137), Expect = 9e-08
Identities = 30/75 (40%), Positives = 42/75 (56%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K++ LDEAD++T +Q AL F L NY S II PI SRC F+F L
Sbjct: 414 FKIIFLDEADNLTRDSQQALRRIMEMYSDACRFILAANYSSAIIDPIQSRCVVFKFTKLP 473
Query: 215 RENVIKRLREICEAK 259
+ +RLR+I E++
Sbjct: 474 ESAIKERLRKIAESE 488
Score = 32.7 bits (71), Expect = 9.1
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 253 SENVDVGEGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPEKLVNEY 432
SE V++ E + L+ V EGD+RRA+ LQ L I D + ++ + V E
Sbjct: 487 SEGVEITE-DALDAIVYVSEGDMRRAINVLQAAAALGREIDEDTVFQIAATARPEEVREM 545
Query: 433 L 435
+
Sbjct: 546 I 546
>UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
5, putative - Leishmania major
Length = 351
Score = 58.0 bits (134), Expect = 2e-07
Identities = 29/84 (34%), Positives = 44/84 (52%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+V+L+E D M+ AQ AL L+CN SR+IPP+ SRC R +
Sbjct: 132 YKVVVLNEVDKMSRTAQHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSRCLGIRVASHS 191
Query: 215 RENVIKRLREICEAKTWMLVKVRF 286
++N+ ++ +CE + L V F
Sbjct: 192 KDNLKLAVQRVCEGEGRPLPSVAF 215
>UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mja RFC-1 intein; Mja RFC-2 intein; Mja RFC- 3 intein];
n=1; Methanocaldococcus jannaschii|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Mja RFC-1 intein; Mja RFC-2
intein; Mja RFC- 3 intein] - Methanococcus jannaschii
Length = 1847
Score = 57.2 bits (132), Expect = 4e-07
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +2
Query: 143 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICE 253
CNY S+IIPPI SRC+ FRF PL +E++ K+L+EI E
Sbjct: 1668 CNYPSKIIPPIQSRCAVFRFSPLKKEDIAKKLKEIAE 1704
>UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8;
Eutheria|Rep: Replication factor C subunit 2 - Rattus
norvegicus (Rat)
Length = 216
Score = 55.6 bits (128), Expect = 1e-06
Identities = 30/69 (43%), Positives = 34/69 (49%)
Frame = +2
Query: 47 ILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLARENV 226
ILDEADSMT AQ AL F L CN +II PI SRC R+ L V
Sbjct: 1 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCGWLRYTKLTDAQV 60
Query: 227 IKRLREICE 253
+ RL + E
Sbjct: 61 LSRLMNVIE 69
>UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: activator 1 36 kda
subunit - Entamoeba histolytica HM-1:IMSS
Length = 325
Score = 54.8 bits (126), Expect = 2e-06
Identities = 29/70 (41%), Positives = 37/70 (52%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K +ILDE+D +T AQ AL F ICN V I P I SRC+K RF PL+
Sbjct: 102 KFIILDESDKLTKDAQNALRRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSP 161
Query: 218 ENVIKRLREI 247
+ + K + I
Sbjct: 162 DALTKIVENI 171
>UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, whole
genome shotgun sequence; n=2; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_95, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 384
Score = 54.8 bits (126), Expect = 2e-06
Identities = 30/71 (42%), Positives = 38/71 (53%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+VILDEADS+T AQ AL F L CN +++I I SRC RF L
Sbjct: 104 HKIVILDEADSLTEGAQQALRMIISDYSTSTRFVLSCNDSTKLIDAIQSRCCILRFNRLG 163
Query: 215 RENVIKRLREI 247
+ + RL EI
Sbjct: 164 EKEIRDRLLEI 174
>UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1;
Guillardia theta|Rep: Replication factor C 37 KD subunit
- Guillardia theta (Cryptomonas phi)
Length = 290
Score = 54.4 bits (125), Expect = 3e-06
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K+V++DEAD ++ +Q AL F LICNY +RII P+ SR F+ + L
Sbjct: 87 KVVVIDEADLLSVISQEALRRIIEKFSLSSRFILICNYPTRIIEPLQSRFILFKIENLNF 146
Query: 218 ENVIKRLR 241
EN+IK ++
Sbjct: 147 ENIIKLIK 154
>UniRef50_A6DLE8 Cluster: DNA polymerase III, gamma and tau
subunits; n=1; Lentisphaera araneosa HTCC2155|Rep: DNA
polymerase III, gamma and tau subunits - Lentisphaera
araneosa HTCC2155
Length = 890
Score = 54.0 bits (124), Expect = 3e-06
Identities = 27/78 (34%), Positives = 38/78 (48%)
Frame = +2
Query: 26 CPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFK 205
CP YK+ I+DE ++ AA AL F V R++P I SRC + K
Sbjct: 119 CP-YKIFIIDEVHMLSNAAWNALLKTLEEPPPHIKFLFATTEVHRVLPTILSRCQRLELK 177
Query: 206 PLARENVIKRLREICEAK 259
P+ R + RL+ ICE +
Sbjct: 178 PIPRNVIAGRLKHICETE 195
>UniRef50_Q4UIQ4 Cluster: Replication factor C subunit, putative;
n=3; Piroplasmida|Rep: Replication factor C subunit,
putative - Theileria annulata
Length = 351
Score = 53.2 bits (122), Expect = 6e-06
Identities = 25/77 (32%), Positives = 42/77 (54%)
Frame = +2
Query: 29 PSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKP 208
PSY+ + ++AD++T AQAAL L +SRI+PP+ SRC R +
Sbjct: 126 PSYRAFLFEDADTLTQEAQAALRRTMETYIKNARMFLHVRQLSRIMPPLRSRCLCIRVRS 185
Query: 209 LARENVIKRLREICEAK 259
+ +++ LR+IC ++
Sbjct: 186 HTNDEIVQILRKICNSE 202
>UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) (PabRFC small
subunit) [Contains: Pab RFC-1 intein; Pab RFC-2 intein];
n=2; Euryarchaeota|Rep: Replication factor C small
subunit (RFC small subunit) (Clamp loader small subunit)
(PabRFC small subunit) [Contains: Pab RFC-1 intein; Pab
RFC-2 intein] - Pyrococcus abyssi
Length = 1437
Score = 52.0 bits (119), Expect = 1e-05
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +2
Query: 143 CNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICE 253
CNY S+II PI SRC+ FRF+PL E++ KRLR I E
Sbjct: 1256 CNYSSKIIEPIQSRCAIFRFRPLNDEDIAKRLRYIAE 1292
>UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;
n=1; Encephalitozoon cuniculi|Rep: DNA REPLICATION
FACTOR C 38kDa SUBUNIT - Encephalitozoon cuniculi
Length = 354
Score = 50.4 bits (115), Expect = 4e-05
Identities = 27/80 (33%), Positives = 40/80 (50%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
KLV++ A+ +T AQAAL L+CN +SR+I PI SRC R +
Sbjct: 130 KLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEPIRSRCFFLRIPGFSD 189
Query: 218 ENVIKRLREICEAKTWMLVK 277
E+V + I E + + + K
Sbjct: 190 EDVTSNMCRILEKENYTVPK 209
>UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44 -
Bacteriophage KVP40
Length = 318
Score = 50.0 bits (114), Expect = 6e-05
Identities = 25/55 (45%), Positives = 30/55 (54%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
K VILDEAD++T AQ AL F L CNY +I+ PI SR +F F
Sbjct: 104 KAVILDEADNLTPDAQKALRGLIEQYSKNVRFVLTCNYAQKILTPIRSRLQEFEF 158
>UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3;
Aquifex aeolicus|Rep: DNA polymerase III gamma subunit -
Aquifex aeolicus
Length = 473
Score = 49.6 bits (113), Expect = 7e-05
Identities = 26/73 (35%), Positives = 37/73 (50%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DEA +T A AL F L +I+P I SRC + F +
Sbjct: 120 YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTVFVLCTTEYDKILPTILSRCQRIIFSKVR 179
Query: 215 RENVIKRLREICE 253
+E VI+ L++ICE
Sbjct: 180 KEKVIEYLKKICE 192
>UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Clostridiaceae|Rep: DNA polymerase III,
subunits gamma and tau - Clostridium oremlandii OhILAs
Length = 563
Score = 49.6 bits (113), Expect = 7e-05
Identities = 26/73 (35%), Positives = 36/73 (49%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++T A AL F L +I I SRC +F FKP+
Sbjct: 120 YKIYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRFDFKPVR 179
Query: 215 RENVIKRLREICE 253
+++KRL ICE
Sbjct: 180 INDIMKRLESICE 192
>UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Opitutaceae bacterium TAV2|Rep: DNA polymerase
III, subunits gamma and tau - Opitutaceae bacterium TAV2
Length = 388
Score = 49.2 bits (112), Expect = 1e-04
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +2
Query: 8 RADGRPCPS---YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPIT 178
R D R P+ +K+ I+DE ++TAA AL F V +++P I
Sbjct: 111 RDDVRYAPTQGKFKIYIIDEVHMLSTAAFNALLKTLEEPPEHVKFVFATTDVQKVLPTIL 170
Query: 179 SRCSKFRFKPLARENVIKRLREI 247
SRC +F KP+ + +IKRL +I
Sbjct: 171 SRCQRFDLKPIPDDLIIKRLAQI 193
>UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64;
Eukaryota|Rep: Replication factor C subunit 3 - Homo
sapiens (Human)
Length = 356
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/73 (34%), Positives = 36/73 (49%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+V+L E D +T AQ AL L CN S++IPPI SRC R +
Sbjct: 129 FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPS 188
Query: 215 RENVIKRLREICE 253
E++ L +C+
Sbjct: 189 IEDICHVLSTVCK 201
>UniRef50_Q7UQ66 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Pirellula sp.|Rep: DNA polymerase III gamma and tau
subunits - Rhodopirellula baltica
Length = 676
Score = 48.0 bits (109), Expect = 2e-04
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +2
Query: 20 RPCPS-YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKF 196
RP S YK+ I+DE +T AA AL F +I + SRC +F
Sbjct: 148 RPSRSRYKIYIIDEVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRF 207
Query: 197 RFKPLARENVIKRLREICEAK 259
F P+ + +++RLREI EA+
Sbjct: 208 DFAPVESDKIVQRLREIVEAE 228
>UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Fervidobacterium nodosum Rt17-B1|Rep: DNA
polymerase III, subunits gamma and tau -
Fervidobacterium nodosum Rt17-B1
Length = 517
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/73 (32%), Positives = 35/73 (47%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +T A AL F L +I P I SRC F+ ++
Sbjct: 118 YKVYIIDEVHMLTREAFNALLKTLEEPPQHIVFILATTNPEKIPPTIMSRCHVLEFRNIS 177
Query: 215 RENVIKRLREICE 253
EN+I +L+ +CE
Sbjct: 178 EENIISKLKSVCE 190
>UniRef50_Q5UQ47 Cluster: Putative replication factor C small
subunit R395; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit R395 -
Mimivirus
Length = 319
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/71 (36%), Positives = 35/71 (49%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K+++LDEAD MT+ Q + F CN S+II I S C RFK L
Sbjct: 103 KIILLDEADIMTSKCQYDINNMIKKFGRKTKFIFTCNDSSKIIEDIQSICRILRFKKLTD 162
Query: 218 ENVIKRLREIC 250
E + + L +IC
Sbjct: 163 EQINQYLSKIC 173
>UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 825
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/73 (34%), Positives = 35/73 (47%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +TTAA AL F L +I+ I SRC +F F +
Sbjct: 127 YKIYIIDEVHMLTTAAFNALLKTLEEPPAHVIFVLCTTDPQKILETILSRCQRFDFHRIG 186
Query: 215 RENVIKRLREICE 253
E++ RL +CE
Sbjct: 187 NEDIEHRLSYVCE 199
>UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subunit;
n=2; Thermotoga|Rep: DNA polymerase III, gamma and tau
subunit - Thermotoga maritima
Length = 478
Score = 46.8 bits (106), Expect = 5e-04
Identities = 25/75 (33%), Positives = 37/75 (49%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +T A AL F L + ++ P I SRC F F+ +
Sbjct: 118 YKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVFEFRNIP 177
Query: 215 RENVIKRLREICEAK 259
E + KRL+E+ EA+
Sbjct: 178 DELIEKRLQEVAEAE 192
>UniRef50_Q8RDE3 Cluster: ATPase involved in DNA replication; n=3;
Thermoanaerobacter|Rep: ATPase involved in DNA
replication - Thermoanaerobacter tengcongensis
Length = 320
Score = 46.0 bits (104), Expect = 0.001
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 20 RPCPSYKLV-ILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKF 196
+P S+K V I+D AD MT AAQ A F LI + ++P + SRC+
Sbjct: 96 KPYESFKKVFIIDRADKMTPAAQNAFLKTLEEPPLYGLFILISPQIEALLPTVVSRCNVV 155
Query: 197 RFKPLARENVIK 232
RFK R+ VIK
Sbjct: 156 RFK-RERKEVIK 166
>UniRef50_Q2RZH6 Cluster: DNA polymerase III, subunits gamma and
tau, putative; n=1; Salinibacter ruber DSM 13855|Rep:
DNA polymerase III, subunits gamma and tau, putative -
Salinibacter ruber (strain DSM 13855)
Length = 728
Score = 46.0 bits (104), Expect = 0.001
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K+ ILDE ++ A AL F +++P I SRC +F F+ +
Sbjct: 129 KVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTILSRCQRFDFRRIPV 188
Query: 218 ENVIKRLREICEAK 259
+++RLREICE +
Sbjct: 189 PEIVQRLREICETE 202
>UniRef50_Q6F0D9 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Mesoplasma florum|Rep: DNA polymerase III gamma and
tau subunits - Mesoplasma florum (Acholeplasma florum)
Length = 631
Score = 45.6 bits (103), Expect = 0.001
Identities = 27/81 (33%), Positives = 39/81 (48%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +T AA AL F L ++I I SRC F FK +
Sbjct: 121 YKIYIIDEVHMLTKAAFNALLKTLEEPPVHAIFILATTEYAKIPATILSRCQIFNFKKID 180
Query: 215 RENVIKRLREICEAKTWMLVK 277
R +++ RL ICE + + + K
Sbjct: 181 RISLMNRLSFICENEGYKIDK 201
>UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Clostridia|Rep: DNA polymerase III, subunits
gamma and tau - Moorella thermoacetica (strain ATCC
39073)
Length = 589
Score = 45.6 bits (103), Expect = 0.001
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +T A AL F L +++P I SRC +F F PL
Sbjct: 121 YKVYIIDEVHMLTQEAFNALLKTLEEPPAHAVFILATTEPRKVLPTILSRCQRFDFHPLT 180
Query: 215 RENVIKRLREICEA 256
+ + RL+E+ A
Sbjct: 181 VQAIAGRLQEVAAA 194
>UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Bdellovibrio bacteriovorus|Rep: DNA polymerase III
gamma and tau subunits - Bdellovibrio bacteriovorus
Length = 621
Score = 44.8 bits (101), Expect = 0.002
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++T+A AL F + V +I I SRC +F F+ ++
Sbjct: 136 YKIYIIDEVHMLSTSAFNALLKTLEEPPAHVVFIMATTEVHKIPQTILSRCQRFDFRRIS 195
Query: 215 RENVIKRLREICE 253
++ +RL+ IC+
Sbjct: 196 TRSITERLKLICD 208
>UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Thermosipho melanesiensis BI429|Rep: DNA
polymerase III, subunits gamma and tau - Thermosipho
melanesiensis BI429
Length = 460
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/73 (34%), Positives = 35/73 (47%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DEA +T A AL F L +I I SRC FK ++
Sbjct: 118 YKVYIIDEAHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVIDFKNIS 177
Query: 215 RENVIKRLREICE 253
+++IKRL +CE
Sbjct: 178 NKDIIKRLEFVCE 190
>UniRef50_Q830L8 Cluster: DNA polymerase III, delta prime subunit;
n=2; Enterococcus|Rep: DNA polymerase III, delta prime
subunit - Enterococcus faecalis (Streptococcus faecalis)
Length = 316
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K+ ++ EAD M+T A +L L +SRI+P I SRC F+PL +
Sbjct: 112 KVFLIQEADKMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVK 171
Query: 218 ENVIKRL 238
+ +I RL
Sbjct: 172 KTLIDRL 178
>UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1;
Ajellomyces capsulatus NAm1|Rep: Activator 1 37 kDa
subunit - Ajellomyces capsulatus NAm1
Length = 231
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/39 (51%), Positives = 24/39 (61%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCL 139
PCP +K++ILDEADSMT AQ+AL FCL
Sbjct: 79 PCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCL 117
>UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12;
Saccharomycetales|Rep: Replication factor C subunit 5 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 354
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFR 199
YK VI++EA+S+T AQAAL ++C+ +S II PI SRC R
Sbjct: 135 YKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIR 189
>UniRef50_Q8KCT6 Cluster: DNA polymerase III, gamma and tau
subunits; n=10; Chlorobiaceae|Rep: DNA polymerase III,
gamma and tau subunits - Chlorobium tepidum
Length = 620
Score = 44.0 bits (99), Expect = 0.004
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
Y++ I+DE ++TAA A F + +I I SRC +F FK +
Sbjct: 128 YRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIP 187
Query: 215 RENVIKRLREICEAK 259
+ + +LR+IC+A+
Sbjct: 188 LDRIQGQLRQICDAE 202
>UniRef50_Q8G0U2 Cluster: DNA polymerase III, delta prime subunit
domain protein; n=6; Brucellaceae|Rep: DNA polymerase
III, delta prime subunit domain protein - Brucella suis
Length = 360
Score = 44.0 bits (99), Expect = 0.004
Identities = 24/69 (34%), Positives = 34/69 (49%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
++++VI+D AD M A AL F LI + R++P I SRC FKPL
Sbjct: 142 AWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQSISFKPL 201
Query: 212 ARENVIKRL 238
E + + L
Sbjct: 202 DGETLGRAL 210
>UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subunits;
n=17; Bacilli|Rep: DNA polymerase III gamma and tau
subunits - Staphylococcus haemolyticus (strain JCSC1435)
Length = 571
Score = 44.0 bits (99), Expect = 0.004
Identities = 25/73 (34%), Positives = 33/73 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +TT A AL F L +I P I SR +F FK +
Sbjct: 120 YKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIG 179
Query: 215 RENVIKRLREICE 253
E + RLR + E
Sbjct: 180 TEQITDRLRFVAE 192
>UniRef50_A2BZ44 Cluster: DNA polymerase, gamma and tau subunits;
n=5; Prochlorococcus marinus|Rep: DNA polymerase, gamma
and tau subunits - Prochlorococcus marinus (strain MIT
9515)
Length = 595
Score = 44.0 bits (99), Expect = 0.004
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+ ++DE ++TAA AL F L R+I I SRC KF FK ++
Sbjct: 124 WKVYVIDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRCQKFDFKRIS 183
Query: 215 RENVIKRLREICEAKT 262
+ L EI ++
Sbjct: 184 SNTIFHNLSEIANKES 199
>UniRef50_A3CUW4 Cluster: Replication factor C; n=2;
Methanomicrobiales|Rep: Replication factor C -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 336
Score = 44.0 bits (99), Expect = 0.004
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +2
Query: 11 ADGRPCPS-YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRC 187
A RP + +KL++ ++A +T AQ AL F + S IIP I SRC
Sbjct: 111 ASMRPLDADFKLMVFEDAHGLTFEAQQALRRTMERYSATCRFIFVTVRPSAIIPAIASRC 170
Query: 188 SKFRFKPLARENVIKRLREICEAK 259
F P+ V+ RL EI A+
Sbjct: 171 LPLFFAPVESSLVLTRLEEILAAE 194
>UniRef50_Q9RRS5 Cluster: DNA polymerase III, tau/gamma subunit;
n=3; Deinococcus|Rep: DNA polymerase III, tau/gamma
subunit - Deinococcus radiodurans
Length = 615
Score = 43.6 bits (98), Expect = 0.005
Identities = 25/67 (37%), Positives = 32/67 (47%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K+ ILDEA M+ AA AL F L +IIP I SRC +RF+ L
Sbjct: 118 KIYILDEAHMMSRAAFNALLKTLEEPPEHVIFILATTEPEKIIPTILSRCQHYRFRRLTS 177
Query: 218 ENVIKRL 238
E + +L
Sbjct: 178 EEIAGKL 184
>UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Cyanothece sp. CCY 0110|Rep: DNA polymerase III
gamma and tau subunits - Cyanothece sp. CCY 0110
Length = 373
Score = 43.6 bits (98), Expect = 0.005
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
++ I+DEA ++ +AQ A F L +++ + SRC RF+P+++
Sbjct: 128 RVFIIDEAHQLSNSAQNAFLKTLEEPNNHTKFLLATTEPHKMLETVRSRCLPLRFRPISQ 187
Query: 218 ENVIKRLREICE 253
V KRL EI +
Sbjct: 188 SEVAKRLEEIAK 199
>UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subunits;
n=3; Nostocaceae|Rep: DNA polymerase III gamma and tau
subunits - Anabaena sp. (strain PCC 7120)
Length = 655
Score = 43.2 bits (97), Expect = 0.006
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ ++DE +++AA AL F L R++P I SRC +F F+ +
Sbjct: 122 YKVYVIDECHMLSSAAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIQ 181
Query: 215 RENVIKRLREI 247
E ++K L I
Sbjct: 182 LEAMVKHLSAI 192
>UniRef50_Q11HZ8 Cluster: DNA polymerase III, delta prime subunit;
n=2; Mesorhizobium|Rep: DNA polymerase III, delta prime
subunit - Mesorhizobium sp. (strain BNC1)
Length = 354
Score = 43.2 bits (97), Expect = 0.006
Identities = 24/75 (32%), Positives = 36/75 (48%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
P Y++VI+D AD M A AL F LI + R++P I SRC ++
Sbjct: 138 PDGGYRVVIVDPADDMNANAANALLKNLEEPPPRTIFILITHSFGRLLPTIRSRCQVYKL 197
Query: 203 KPLARENVIKRLREI 247
PL+ + K L+ +
Sbjct: 198 DPLSPGLLEKLLQSL 212
>UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Rep:
Sliding clamp loader gp44 - Cyanophage phage S-PM2
Length = 315
Score = 43.2 bits (97), Expect = 0.006
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFK 205
+K+VI+DEAD+ T Q +L F CN+ ++II P+ SRC+ F+
Sbjct: 101 HKVVIIDEADNTTHDVQLSLRTAVEEFHGNCRFIFTCNFQNKIIEPLHSRCTVIDFR 157
>UniRef50_A3FQ95 Cluster: Replication factor C subunit 5, putative;
n=3; Cryptosporidium|Rep: Replication factor C subunit
5, putative - Cryptosporidium parvum Iowa II
Length = 345
Score = 43.2 bits (97), Expect = 0.006
Identities = 25/77 (32%), Positives = 38/77 (49%)
Frame = +2
Query: 29 PSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKP 208
P+Y++ + EAD ++ AQA L L C +S IIPP+ SRC R
Sbjct: 127 PNYRVFTILEADVLSLKAQAGLRRTMEKYSNNSRLILHCEQLSSIIPPLRSRCLCIRVPL 186
Query: 209 LARENVIKRLREICEAK 259
+ E V++ LR I ++
Sbjct: 187 PSPEEVLQVLRFISNSE 203
>UniRef50_A0CIK7 Cluster: Chromosome undetermined scaffold_19, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_19,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 356
Score = 43.2 bits (97), Expect = 0.006
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +2
Query: 8 RADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRC 187
+ + + +K+VI++E D++T AQA+L LIC +++II PI SRC
Sbjct: 124 QVNSKQTKDFKVVIINEVDNLTKEAQASLRRTMEKYIERCRIILICESLAKIINPIRSRC 183
Query: 188 SKFR 199
R
Sbjct: 184 LLIR 187
>UniRef50_Q67TJ5 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Symbiobacterium thermophilum|Rep: DNA polymerase
III gamma and tau subunits - Symbiobacterium
thermophilum
Length = 570
Score = 42.7 bits (96), Expect = 0.009
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +T A AL F L ++ I SRC F ++ L+
Sbjct: 120 YKVYIIDEVHMLTEPAFNALLKTLEEPPAHVLFVLATTEKQKLPITILSRCQAFDYRRLS 179
Query: 215 RENVIKRLREIC 250
+ ++ RLRE+C
Sbjct: 180 ADEIVARLREVC 191
>UniRef50_A6SZH8 Cluster: DNA polymerase III delta' subunit; n=1;
Janthinobacterium sp. Marseille|Rep: DNA polymerase III
delta' subunit - Janthinobacterium sp. (strain
Marseille) (Minibacterium massiliensis)
Length = 344
Score = 42.7 bits (96), Expect = 0.009
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
++V+L A+ + TAA +L F L+ N + R++P I SRC KF R
Sbjct: 136 RVVVLYPAEVLNTAAANSLLKMLEEPPPQTMFLLVSNSLDRLLPTILSRCRKFALALPGR 195
Query: 218 ENVIKRLR--EICEAKTWM 268
+ ++ L+ ++ EA W+
Sbjct: 196 DEALQWLKSQQVSEADGWL 214
>UniRef50_A0UX52 Cluster: DNA-directed DNA polymerase; n=1;
Clostridium cellulolyticum H10|Rep: DNA-directed DNA
polymerase - Clostridium cellulolyticum H10
Length = 322
Score = 42.7 bits (96), Expect = 0.009
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +2
Query: 20 RPCPS-YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKF 196
RP S YK++I+++AD+MT AQ AL F L ++ + I SRC +
Sbjct: 96 RPLYSDYKVIIINDADTMTIQAQNALLKSLEEPPPYVVFILTVQSLAAVAQTIRSRCQRI 155
Query: 197 RFKPLARENVIKRLREICEAK 259
F L+ E+++ EI E+K
Sbjct: 156 LFNRLSHEDIM----EIMESK 172
>UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Synechococcus|Rep: DNA polymerase III,
subunits gamma and tau - Synechococcus sp. (strain
JA-2-3B'a(2-13)) (Cyanobacteria bacteriumYellowstone
B-Prime)
Length = 779
Score = 42.3 bits (95), Expect = 0.011
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 5 KRADGRPCPS-YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITS 181
+RA P S YK+ ++DE ++ AA AL F L R++P I S
Sbjct: 113 ERAQFAPVNSRYKVYVIDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVS 172
Query: 182 RCSKFRFKPLARENVIKRLREI 247
RC +F F+ + ++++ L +I
Sbjct: 173 RCQRFDFRRIPLDDMVAHLGKI 194
>UniRef50_Q7QR65 Cluster: GLP_301_13398_14519; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_301_13398_14519 - Giardia lamblia
ATCC 50803
Length = 373
Score = 41.9 bits (94), Expect = 0.015
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+V+L +AD ++ AQ AL L+ +S +IPPI SRC R +
Sbjct: 122 FKVVVLQDADKLSFTAQQALRRLMEQYAATCKLILMAESISGLIPPIVSRCFCIRVPGFS 181
Query: 215 RENVIKRL 238
E ++ L
Sbjct: 182 DEEIVHAL 189
>UniRef50_UPI0000DAE388 Cluster: hypothetical protein
Rgryl_01000133; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000133 - Rickettsiella
grylli
Length = 324
Score = 41.5 bits (93), Expect = 0.020
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKP 208
+YK+++++ ADS+ AA AL F L+ ++P I SRC RF P
Sbjct: 111 TYKIIVINPADSLLVAASQALLKSLEEPSCRSLFILLTEKREHLLPTIRSRCQLIRFNP 169
>UniRef50_Q181E8 Cluster: Putative DNA polymerase III, delta'
subunit; n=1; Clostridium difficile 630|Rep: Putative
DNA polymerase III, delta' subunit - Clostridium
difficile (strain 630)
Length = 311
Score = 41.5 bits (93), Expect = 0.020
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +2
Query: 20 RPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFR 199
RP YK+ I++ A+ MT AQ AL L+ N ++ I SRC +
Sbjct: 87 RPHKDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIK 146
Query: 200 FKPLARENVIKRL 238
F P+ E++ + L
Sbjct: 147 FSPIPIEDLKRYL 159
>UniRef50_A5NZD9 Cluster: DNA-directed DNA polymerase; n=2;
Alphaproteobacteria|Rep: DNA-directed DNA polymerase -
Methylobacterium sp. 4-46
Length = 347
Score = 41.5 bits (93), Expect = 0.020
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
Y++ ++D A+ + A+ AL F ++ + R++P I SRC + +PL
Sbjct: 143 YRVCVVDCAEELNLASANALLKLIEEPPPRSLFLIVSHAPGRLLPTIRSRCRRLGLRPLG 202
Query: 215 RENVIKRLREICEA 256
V++ LR + EA
Sbjct: 203 EGEVVRVLRGLGEA 216
>UniRef50_Q8RDI6 Cluster: DNA polymerase III, gamma/tau subunits;
n=3; Thermoanaerobacter|Rep: DNA polymerase III,
gamma/tau subunits - Thermoanaerobacter tengcongensis
Length = 518
Score = 41.1 bits (92), Expect = 0.026
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++T A AL F L ++ I SRC +F FK +
Sbjct: 119 YKVYIIDEVHMLSTGAFNALLKTLEEPPRHVIFILATTEPEKLPDTILSRCQRFDFKKIP 178
Query: 215 RENVIKRLREICE 253
+ + + L IC+
Sbjct: 179 TKQIAQNLERICQ 191
>UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Gloeobacter violaceus|Rep: DNA polymerase III gamma
and tau subunits - Gloeobacter violaceus
Length = 632
Score = 41.1 bits (92), Expect = 0.026
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 5 KRADGRPCPS-YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITS 181
+RA P S K+ ILDE +++AA L F L +++P + S
Sbjct: 109 ERAQFAPVQSRQKVYILDEVHMLSSAAFNCLLKTLEEPPAHVTFVLATTDPQKVLPTVIS 168
Query: 182 RCSKFRFKPLARENVIKRLREI 247
RC +F F+ + +++K L EI
Sbjct: 169 RCQRFDFRRIPLTDMVKHLEEI 190
>UniRef50_Q1YNM8 Cluster: DNA polymerase III, delta prime subunit
domain protein, putative; n=2; Aurantimonadaceae|Rep:
DNA polymerase III, delta prime subunit domain protein,
putative - Aurantimonas sp. SI85-9A1
Length = 352
Score = 41.1 bits (92), Expect = 0.026
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
S+++ I+D AD M +A AL F ++ + R++P I SRC RF+PL
Sbjct: 141 SWRIAIIDPADDMNRSAANALLKILEEPPARSVFLIMNHTPGRLLPTIRSRCRTLRFEPL 200
>UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit
gamma/tau; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Similar to DNA polymerase III subunit gamma/tau -
Candidatus Kuenenia stuttgartiensis
Length = 558
Score = 41.1 bits (92), Expect = 0.026
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
Y++ I+DE +T A AL F +R+ + SRC +F FK ++
Sbjct: 120 YRIYIIDEVHMLTREAFNALLKTLEEPPSHVKFIFATTAANRLPETVQSRCQRFDFKNIS 179
Query: 215 RENVIKRLREICEAK 259
++ K L EIC+ +
Sbjct: 180 VNDIEKHLLEICKTE 194
>UniRef50_Q1FL61 Cluster: DNA polymerase III, delta prime subunit;
n=1; Clostridium phytofermentans ISDg|Rep: DNA
polymerase III, delta prime subunit - Clostridium
phytofermentans ISDg
Length = 330
Score = 41.1 bits (92), Expect = 0.026
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DEA+ MT AQ AL L+ N + +P I SRC FK +
Sbjct: 110 YKIYIIDEAEKMTEQAQNALLKTIEEPPGYAIILLLTNNSNSFLPTILSRCVLLNFKAVD 169
Query: 215 RENV 226
+ +
Sbjct: 170 KNKI 173
>UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Cystobacterineae|Rep: DNA polymerase III,
subunits gamma and tau - Anaeromyxobacter sp. Fw109-5
Length = 606
Score = 40.7 bits (91), Expect = 0.034
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ ++DE ++T A AL F L V ++ I SRC +F F+ L
Sbjct: 120 YKVFVVDEVHMLSTGAFNALLKTLEEPPEHVKFVLATTDVHKVPETILSRCQRFDFRRLT 179
Query: 215 RENVIKRLREICEAK 259
+ + +L ++ EA+
Sbjct: 180 LQQIADQLAKVAEAE 194
>UniRef50_A5UZ90 Cluster: DNA polymerase III, delta prime subunit;
n=5; Chloroflexi (class)|Rep: DNA polymerase III, delta
prime subunit - Roseiflexus sp. RS-1
Length = 351
Score = 40.7 bits (91), Expect = 0.034
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
++ IL +A+ ++ AA A+ L+ + ++P + SRC R +PL R
Sbjct: 126 RVFILHDAEKLSEAASNAMLKTLEEPPPYATLILVAHTAGSLLPTVVSRCQLLRLRPLPR 185
Query: 218 ENVIKRLREIC 250
V LR+ C
Sbjct: 186 AQVAAALRQQC 196
>UniRef50_A5FRM9 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Dehalococcoides|Rep: DNA polymerase III,
subunits gamma and tau - Dehalococcoides sp. BAV1
Length = 570
Score = 40.7 bits (91), Expect = 0.034
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
+YK+ I+DE ++ +A AL F L + +++P I SRC +F F +
Sbjct: 123 NYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRV 182
Query: 212 ARENVIKRLREICEAK 259
+ ++ ++L +I A+
Sbjct: 183 SLVDMTRKLGKISLAE 198
>UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-like
protein; n=1; Methanocorpusculum labreanum Z|Rep: DNA
polymerase III gamma/tau subunits-like protein -
Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 332
Score = 40.7 bits (91), Expect = 0.034
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
++L+I D A +T AQAAL F + + ++ II PI SRC F P+
Sbjct: 120 FRLIIFDGAGDLTKDAQAALRRIMEQYSQTCRFIFVTSSLASIIDPIRSRCVPLYFLPID 179
Query: 215 RENVIKRLREICE 253
+ L+ + E
Sbjct: 180 EATMRDYLKHVLE 192
>UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Fusobacterium nucleatum|Rep: DNA polymerase III subunit
gamma/tau - Fusobacterium nucleatum subsp. vincentii
ATCC 49256
Length = 490
Score = 40.3 bits (90), Expect = 0.045
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
K+ I+DEA +T A AL F L + +I+P I SRC ++ FKPL
Sbjct: 127 KVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQRYDFKPL 184
>UniRef50_Q1FKE1 Cluster: DNA polymerase III, subunits gamma and
tau; n=4; Clostridiales|Rep: DNA polymerase III,
subunits gamma and tau - Clostridium phytofermentans
ISDg
Length = 522
Score = 40.3 bits (90), Expect = 0.045
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
+YK+ I+DE ++ A AL F L V +I I SRC ++ F+ +
Sbjct: 119 NYKVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFRRV 178
Query: 212 ARENVIKRLREICE 253
+ + KRLR I E
Sbjct: 179 TIDEITKRLRVITE 192
>UniRef50_Q1GTQ0 Cluster: DNA-directed DNA polymerase; n=1;
Sphingopyxis alaskensis|Rep: DNA-directed DNA polymerase
- Sphingopyxis alaskensis (Sphingomonas alaskensis)
Length = 326
Score = 39.9 bits (89), Expect = 0.060
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
++++I+D D + + AL F L+ + R++P I SRC RF+P+
Sbjct: 118 WRVIIVDAVDDLESDGANALLKTLEEPPARTLFLLVSHSPGRLLPTIRSRCRILRFQPID 177
Query: 215 RENVIKRLREI 247
R+ ++ L ++
Sbjct: 178 RDVMVSWLHDL 188
>UniRef50_A7HXT6 Cluster: ATPase involved in DNA replication; n=5;
Alphaproteobacteria|Rep: ATPase involved in DNA
replication - Parvibaculum lavamentivorans DS-1
Length = 387
Score = 39.9 bits (89), Expect = 0.060
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
++++VI+D AD M + AL F ++ + +++P I SRC R PL
Sbjct: 144 AWRVVIIDSADEMNANSANALLKALEEPPPNGLFLVLSHQPGQLLPTIRSRCRTLRMTPL 203
Query: 212 ARENVIKRL 238
A +++ +
Sbjct: 204 AEGDIVSMM 212
>UniRef50_Q22W14 Cluster: Replication factor C subunit, putative;
n=1; Tetrahymena thermophila SB210|Rep: Replication
factor C subunit, putative - Tetrahymena thermophila
SB210
Length = 358
Score = 39.9 bits (89), Expect = 0.060
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K++I++E D +T AQA+L LI + R+I P+ SRC R +
Sbjct: 132 FKVIIINEVDRLTLEAQASLRRTMEKYIGRCRLILIAENIGRVILPLRSRCLLIRVAAPS 191
Query: 215 RENVIKRLREICEAK 259
++V +R++ K
Sbjct: 192 EQDVKAVVRKLNNEK 206
>UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36
kDa SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT -
Encephalitozoon cuniculi
Length = 283
Score = 39.9 bits (89), Expect = 0.060
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +1
Query: 256 ENVDVGEG-----EILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPEKL 420
EN+ EG E+ ++ + C DLRRA+ LQ L G + E G VP+K
Sbjct: 148 ENIGSKEGLGYDKELYHRILKLCGNDLRRAINVLQGVAPL-GSFCIE---EAVGAVPQKT 203
Query: 421 VNEYLSIKNYSELEEFVQNFLMRAYSASQL 510
V+ + + + E+V+ FL YSA QL
Sbjct: 204 VDMFWEVDR-PRVVEYVREFLREGYSALQL 232
Score = 37.5 bits (83), Expect = 0.32
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKP 208
K VILDE +++T+ AQ L F I NY S+II P+ SR +F P
Sbjct: 86 KTVILDECENLTSDAQHCLRRVIEDSVNTR-FIFITNYPSKIIGPLRSRLVSVKFTP 141
>UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2;
Methanomicrobiales|Rep: Replication factor C large
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 483
Score = 39.9 bits (89), Expect = 0.060
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQ--AALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
KL+ILDEAD++ A A LI N + + I + C+K +FK L
Sbjct: 97 KLIILDEADNLQGNADRGGARAIAEVIRQARQPLILIANDLYGLDGTIRNLCTKVQFKAL 156
Query: 212 ARENVIKRLREIC 250
++++ RLREIC
Sbjct: 157 PAKSLVPRLREIC 169
>UniRef50_Q8DLH4 Cluster: DNA polymerase III delta prime subunit;
n=1; Synechococcus elongatus|Rep: DNA polymerase III
delta prime subunit - Synechococcus elongatus
(Thermosynechococcus elongatus)
Length = 311
Score = 39.5 bits (88), Expect = 0.079
Identities = 25/75 (33%), Positives = 36/75 (48%)
Frame = +2
Query: 41 LVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLARE 220
LV+L +A++M AA AL LI S ++ I SRC K F PL+R+
Sbjct: 120 LVVLTQAETMNEAAANALLKTLEEPGRATLI-LIAPSPSALLNTIVSRCQKIPFYPLSRQ 178
Query: 221 NVIKRLREICEAKTW 265
V + LR++ W
Sbjct: 179 AVEQVLRQVAPPDFW 193
>UniRef50_Q81W10 Cluster: DNA polymerase III, delta prime subunit;
n=11; Bacillus cereus group|Rep: DNA polymerase III,
delta prime subunit - Bacillus anthracis
Length = 327
Score = 39.5 bits (88), Expect = 0.079
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K+ I++ AD MT A AL L+ +I+ I SRC F+PL
Sbjct: 113 KVYIIEHADRMTANAANALLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPT 172
Query: 218 ENVIKRLRE 244
E++I+RL++
Sbjct: 173 ESLIRRLQD 181
>UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau
subunits; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: Putative DNA polymerase III, gamma/tau
subunits - Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008)
Length = 511
Score = 39.5 bits (88), Expect = 0.079
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +T A AL F L +++ I SRC +F FK ++
Sbjct: 119 YKVYIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRIS 178
Query: 215 RENVIKRLREICE 253
+ + + L+ I E
Sbjct: 179 TKTIWEHLKNIAE 191
>UniRef50_Q1ATA7 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Rubrobacter xylanophilus DSM 9941|Rep: DNA
polymerase III, subunits gamma and tau - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 567
Score = 39.5 bits (88), Expect = 0.079
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K+ I+DE +TT A AL F L +++P I SRC F F+
Sbjct: 121 KVYIIDEVHMLTTEAFNALLKMLEEPPEHVVFVLATTEKHKVLPTIISRCQSFDFRRPGV 180
Query: 218 ENVIKRLREICEAK 259
++++L EI A+
Sbjct: 181 GTLVEKLSEIARAE 194
>UniRef50_Q0IE22 Cluster: DNA polymerase III, subunits gamma and
tau; n=13; Cyanobacteria|Rep: DNA polymerase III,
subunits gamma and tau - Synechococcus sp. (strain
CC9311)
Length = 643
Score = 39.5 bits (88), Expect = 0.079
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+ ++DE ++TAA AL F L R++P I SRC +F F+ +
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 215 RENVIKRLREICEAKT 262
E + L I E ++
Sbjct: 184 LEALNSHLAWIAEQES 199
>UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3;
Cyanobacteria|Rep: DNA-directed DNA polymerase -
Cyanothece sp. CCY 0110
Length = 692
Score = 39.5 bits (88), Expect = 0.079
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ ++DE ++ AA AL F L R++P I SRC +F ++ +
Sbjct: 129 YKVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTILSRCQRFDYRRIP 188
Query: 215 RENVIKRLREICE 253
E ++ L I +
Sbjct: 189 LEAMVNHLTIIAQ 201
>UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837,
putative; n=6; Plasmodium|Rep: Drosophila melanogaster
BcDNA.LD06837, putative - Plasmodium yoelii yoelii
Length = 363
Score = 39.5 bits (88), Expect = 0.079
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +2
Query: 29 PSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKP 208
P Y++ + +A+ ++ AQA L L ++S+II P+ SRC R
Sbjct: 138 PMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIRVPL 197
Query: 209 LARENVIKRLREICE 253
E + L+ IC+
Sbjct: 198 PTEEEIFTVLKNICD 212
>UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subunits;
n=4; Cyanobacteria|Rep: DNA polymerase III gamma and tau
subunits - Synechococcus elongatus (Thermosynechococcus
elongatus)
Length = 603
Score = 39.1 bits (87), Expect = 0.10
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ ++DE ++ +A AL F L R++P I SRC +F F+ +
Sbjct: 122 YKVYVIDECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRCQRFDFRRIP 181
Query: 215 RENVIKRLREICE 253
++ L+ I +
Sbjct: 182 LGEMVAHLQNIAD 194
>UniRef50_Q89LM6 Cluster: Bll4517 protein; n=11;
Bradyrhizobiaceae|Rep: Bll4517 protein - Bradyrhizobium
japonicum
Length = 348
Score = 39.1 bits (87), Expect = 0.10
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+++ I+D D + A AL F L+ + +R++ I SRC K R +PL
Sbjct: 140 WRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPARVLATIQSRCRKLRLRPLG 199
Query: 215 RENVIKRLRE 244
+ VI E
Sbjct: 200 TDEVISAAAE 209
>UniRef50_Q899U1 Cluster: DNA polymerase III subunits gamma and tau;
n=12; Clostridium|Rep: DNA polymerase III subunits gamma
and tau - Clostridium tetani
Length = 552
Score = 39.1 bits (87), Expect = 0.10
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++T A A F L ++ I SRC +F FK +
Sbjct: 123 YKVYIMDEVHMLSTGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFKRIK 182
Query: 215 RENVIKRLREI 247
E++ +RLR I
Sbjct: 183 SEDIFQRLRFI 193
>UniRef50_O25419 Cluster: DNA polymerase III gamma and tau subunits;
n=4; Helicobacter|Rep: DNA polymerase III gamma and tau
subunits - Helicobacter pylori (Campylobacter pylori)
Length = 578
Score = 39.1 bits (87), Expect = 0.10
Identities = 24/73 (32%), Positives = 31/73 (42%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE TT A AL F L ++ I SR FRFK +
Sbjct: 118 YKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIP 177
Query: 215 RENVIKRLREICE 253
+VI L+ I E
Sbjct: 178 ENSVISHLKTILE 190
>UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Trichodesmium erythraeum IMS101|Rep: DNA
polymerase III, subunits gamma and tau - Trichodesmium
erythraeum (strain IMS101)
Length = 695
Score = 39.1 bits (87), Expect = 0.10
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ ++DE ++ +A AL F L R++ I SRC +F F+ +
Sbjct: 122 YKVYVIDEVHMLSVSAFNALLKTLEEPPKGVVFILATTDPQRVLATIISRCQRFDFRRIP 181
Query: 215 RENVIKRLREI 247
E ++K L I
Sbjct: 182 LEAMVKHLHHI 192
>UniRef50_A7HD56 Cluster: DNA polymerase III, delta prime subunit;
n=2; Anaeromyxobacter|Rep: DNA polymerase III, delta
prime subunit - Anaeromyxobacter sp. Fw109-5
Length = 347
Score = 39.1 bits (87), Expect = 0.10
Identities = 27/78 (34%), Positives = 34/78 (43%)
Frame = +2
Query: 5 KRADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSR 184
KR +GR + VILD AD+M AQ AL L+ ++P I SR
Sbjct: 126 KRFEGRR----RFVILDPADAMNPQAQNALLKTLEEPPEATTLVLVAASPDALLPTIRSR 181
Query: 185 CSKFRFKPLARENVIKRL 238
C + F PL V RL
Sbjct: 182 CLRVPFAPLPAAAVAARL 199
>UniRef50_A6BZZ4 Cluster: DNA polymerase III, tau/gamma subunit;
n=1; Planctomyces maris DSM 8797|Rep: DNA polymerase
III, tau/gamma subunit - Planctomyces maris DSM 8797
Length = 353
Score = 39.1 bits (87), Expect = 0.10
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
++ I+D+AD M + AL LI + + I+P I SRC RF L +
Sbjct: 125 RIAIIDDADKMNAESANALLKTLEEPSANYLMILIASELDAILPTIRSRCQLIRFNRLTQ 184
Query: 218 ENV 226
E+V
Sbjct: 185 EDV 187
>UniRef50_Q5UZL1 Cluster: Replication factor C small subunit; n=2;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 335
Score = 39.1 bits (87), Expect = 0.10
Identities = 23/76 (30%), Positives = 31/76 (40%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
SYK ++LD A+ M Q AL F + S +IPPI SRC +
Sbjct: 121 SYKTILLDNAEGMREDFQQALRRVMEQYYEATQFVIATRQPSAVIPPIRSRCFPVVMREP 180
Query: 212 ARENVIKRLREICEAK 259
E L +I A+
Sbjct: 181 THEETASVLEDIVTAE 196
>UniRef50_Q6FZU9 Cluster: DNA polymerase III, delta prime subunit;
n=3; Bartonella|Rep: DNA polymerase III, delta prime
subunit - Bartonella quintana (Rochalimaea quintana)
Length = 351
Score = 38.7 bits (86), Expect = 0.14
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+++VI+D AD M +A A+ F +I + +++P I SRC + +PL
Sbjct: 137 WRIVIIDPADDMNRSAANAILKTLEEPPAKTLFIIITHSSGKLLPTIRSRCQQISLRPLH 196
Query: 215 RENVIKRLREI 247
+ + K + +
Sbjct: 197 DDEMKKVITHV 207
>UniRef50_Q67JB2 Cluster: DNA polymerase III delta' subunit; n=1;
Symbiobacterium thermophilum|Rep: DNA polymerase III
delta' subunit - Symbiobacterium thermophilum
Length = 332
Score = 38.7 bits (86), Expect = 0.14
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+VI+D A+ M + L F L+ + ++P I SRC F PL
Sbjct: 111 YKVVIIDGAERMNAESGNRLLKVLEEPPPYACFVLLTTNAAGVLPTIVSRCQIVHFSPLP 170
Query: 215 RENVIKRLRE 244
E + L+E
Sbjct: 171 AEAIAAVLQE 180
>UniRef50_Q18C99 Cluster: DNA polymerase III subunit gamma/tau; n=2;
Clostridium difficile|Rep: DNA polymerase III subunit
gamma/tau - Clostridium difficile (strain 630)
Length = 545
Score = 38.7 bits (86), Expect = 0.14
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++ A AL F L +I I SRC ++ FK +
Sbjct: 119 YKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVT 178
Query: 215 RENVIKRLREICE 253
+++ R+++ICE
Sbjct: 179 VKDMTLRMKKICE 191
>UniRef50_Q022F8 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Solibacter usitatus Ellin6076|Rep: DNA
polymerase III, subunits gamma and tau - Solibacter
usitatus (strain Ellin6076)
Length = 568
Score = 38.7 bits (86), Expect = 0.14
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DEA +T A AL F L +I I SRC F F+ +
Sbjct: 119 YKIFIIDEAHQITNEAFNALLKTIEEPPEWAVFVLCTTESHKIPATIASRCQHFSFRSVD 178
Query: 215 RENVIKRLREIC 250
+ ++ R+ IC
Sbjct: 179 FQELVDRMSWIC 190
>UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;
n=2; Peptococcaceae|Rep: DNA polymerase III, gamma/tau
subunits - Pelotomaculum thermopropionicum SI
Length = 558
Score = 38.7 bits (86), Expect = 0.14
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
Y++ I+DE +T+ A AL L R+ I SRC +F F+ +
Sbjct: 120 YRVYIIDEVHMLTSEAFNALLKTLEEPPRHAVLILATTEPHRVPLTILSRCQRFDFRRII 179
Query: 215 RENVIKRLREI 247
++IKRL+E+
Sbjct: 180 PADIIKRLKEV 190
>UniRef50_A3DHB9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Clostridium thermocellum ATCC 27405|Rep: DNA
polymerase III, subunits gamma and tau - Clostridium
thermocellum (strain ATCC 27405 / DSM 1237)
Length = 547
Score = 38.7 bits (86), Expect = 0.14
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++T A AL F L ++ I SRC +F F+ +
Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKLPATILSRCQRFDFRRIP 179
Query: 215 RENVIKRLREICE 253
++++KR+ I +
Sbjct: 180 VDSIVKRIEYIAK 192
>UniRef50_A0KKI0 Cluster: DNA polymerase III, delta' subunit; n=2;
Aeromonas|Rep: DNA polymerase III, delta' subunit -
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966
/ NCIB 9240)
Length = 315
Score = 38.7 bits (86), Expect = 0.14
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K+VI+ +A+ MT +A AL LI + VSR++P I SRC K + A
Sbjct: 106 KVVIIPDAERMTESAANALLKTLEEPAGDSLLLLIASQVSRLLPTILSRCHKHVCQLPAE 165
Query: 218 ENVIKRLREICEAKTWMLVKV 280
++ L E T V++
Sbjct: 166 GETVRWLAEQGHQATLAQVRI 186
>UniRef50_Q5UQE8 Cluster: Putative replication factor C small
subunit L478; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L478 -
Mimivirus
Length = 370
Score = 38.7 bits (86), Expect = 0.14
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKF 196
+K +++ +++ +QAAL F ++CN +S+I+ P+ SRC F
Sbjct: 127 FKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRTF 180
>UniRef50_O84338 Cluster: DNA Pol III Gamma and Tau; n=8;
Chlamydiaceae|Rep: DNA Pol III Gamma and Tau - Chlamydia
trachomatis
Length = 466
Score = 38.3 bits (85), Expect = 0.18
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +T A +L F L +++I I+SRC K K ++
Sbjct: 122 YKIYIIDEVHMLTKEAFNSLLKTLEEPPVHVKFFLATTEIAKIPNTISSRCQKMLLKRIS 181
Query: 215 RENVIKRLREICE 253
E +I +L I +
Sbjct: 182 EETIIDKLATIAK 194
>UniRef50_Q28SW9 Cluster: DNA-directed DNA polymerase; n=25;
Rhodobacterales|Rep: DNA-directed DNA polymerase -
Jannaschia sp. (strain CCS1)
Length = 374
Score = 38.3 bits (85), Expect = 0.18
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
++VI+D AD M +A AL LI + S ++P I SRC RF PL
Sbjct: 149 RVVIVDSADEMNPSAANALLKELEEPPEGAVLFLISHRPSGLLPTIRSRCRTLRFNPL 206
>UniRef50_A6CH16 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Planctomyces maris DSM 8797|Rep: DNA polymerase III
gamma and tau subunits - Planctomyces maris DSM 8797
Length = 484
Score = 38.3 bits (85), Expect = 0.18
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +T A AL F +++ I SRC +F F +
Sbjct: 125 YKIYIIDEVHMLTKEAFNALLKTLEEPPPNVKFIFCTTEPNKLPDTILSRCQRFDFGYIE 184
Query: 215 RENVIKRLREICEAK 259
++ RL++I EA+
Sbjct: 185 ENSICDRLKQIAEAE 199
>UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Magnetococcus sp. MC-1|Rep: DNA polymerase
III, subunits gamma and tau - Magnetococcus sp. (strain
MC-1)
Length = 605
Score = 38.3 bits (85), Expect = 0.18
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ ILDE ++ ++ AL F V +I+P I SRC ++ + L
Sbjct: 124 YKIYILDEVHMLSASSFNALLKTLEEPPTHVKFIFATTEVRKILPTILSRCQRYDLRRLD 183
Query: 215 RENVIKRLREICEAK 259
R+ + + L + + +
Sbjct: 184 RDGLARYLAHVLDVE 198
>UniRef50_P09122 Cluster: DNA polymerase III subunit gamma/tau;
n=16; Bacillaceae|Rep: DNA polymerase III subunit
gamma/tau - Bacillus subtilis
Length = 563
Score = 38.3 bits (85), Expect = 0.18
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
+YK+ I+DE ++ A AL F L +I I SRC +F FK +
Sbjct: 119 TYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRI 178
Query: 212 ARENVIKRLREICEAK 259
+ ++ R+ +I +A+
Sbjct: 179 TSQAIVGRMNKIVDAE 194
>UniRef50_Q6MP27 Cluster: DNA polymerase III delta' subunit; n=1;
Bdellovibrio bacteriovorus|Rep: DNA polymerase III
delta' subunit - Bdellovibrio bacteriovorus
Length = 314
Score = 37.9 bits (84), Expect = 0.24
Identities = 19/68 (27%), Positives = 37/68 (54%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
+++++D+A ++ A +L F LI V+ I+P I SR +F+PL +
Sbjct: 109 RVIVIDQAQTLNPQAANSLLKTLEEPPEGTFFFLIAPSVAGILPTIRSRSRIVQFRPLTQ 168
Query: 218 ENVIKRLR 241
E++ KR++
Sbjct: 169 EDLGKRVK 176
>UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Syntrophus aciditrophicus SB|Rep: DNA polymerase III
subunit gamma/tau - Syntrophus aciditrophicus (strain
SB)
Length = 588
Score = 37.9 bits (84), Expect = 0.24
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +T A AL F ++ I SRC F F+ L+
Sbjct: 120 YKVYIIDEVHMLTREAFNALLKTLEEPPPHVVFIFATTETHKVPATILSRCQCFEFRRLS 179
Query: 215 RENVIKRLREICEAK 259
+ ++LR+I E +
Sbjct: 180 LRQIAEQLRKIAETE 194
>UniRef50_A4J0K7 Cluster: DNA polymerase III, delta prime subunit;
n=1; Desulfotomaculum reducens MI-1|Rep: DNA polymerase
III, delta prime subunit - Desulfotomaculum reducens
MI-1
Length = 335
Score = 37.9 bits (84), Expect = 0.24
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +2
Query: 47 ILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLARENV 226
IL+++++MT A F L+ + ++P I SRC + +F+ L+ + V
Sbjct: 114 ILEKSETMTQEAANCFLKTLEEPGSATVFILLSDQPYGLLPTILSRCQQLQFRSLSNQEV 173
Query: 227 IKRLREICE 253
+ LR +C+
Sbjct: 174 SEGLRVLCQ 182
>UniRef50_P47658 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Mycoplasma genitalium|Rep: DNA polymerase III subunit
gamma/tau - Mycoplasma genitalium
Length = 597
Score = 37.9 bits (84), Expect = 0.24
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K+ ILDEA +TT + L F ++I I SRC F FK +
Sbjct: 120 KVYILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITS 179
Query: 218 ENVIKRLREICE 253
+ +++RL +I +
Sbjct: 180 DLILERLNDIAK 191
>UniRef50_Q2S490 Cluster: Putative DNA polymerase III, delta'
subunit; n=1; Salinibacter ruber DSM 13855|Rep: Putative
DNA polymerase III, delta' subunit - Salinibacter ruber
(strain DSM 13855)
Length = 395
Score = 37.5 bits (83), Expect = 0.32
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
+YK+ +L +A+ M A F L N +++P I SRC + RF PL
Sbjct: 153 AYKVNVLIDAEKMREEAANTFLKLLEEPPPQTVFLLTTNRPEQLLPTILSRCQQLRFDPL 212
Query: 212 ARENVIKRL 238
E + + L
Sbjct: 213 LPETIEQAL 221
>UniRef50_Q18U88 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Desulfitobacterium hafniense|Rep: DNA
polymerase III, subunits gamma and tau -
Desulfitobacterium hafniense (strain DCB-2)
Length = 554
Score = 37.5 bits (83), Expect = 0.32
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +TT A AL F L V +I I SR +F F +
Sbjct: 120 YKVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIP 179
Query: 215 RENVIKRLREICE 253
E + L ++C+
Sbjct: 180 LEQIHSHLDKVCQ 192
>UniRef50_Q0ASK9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Maricaulis maris MCS10|Rep: DNA polymerase
III, subunits gamma and tau - Maricaulis maris (strain
MCS10)
Length = 606
Score = 37.5 bits (83), Expect = 0.32
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++T+A AL F + ++ + SRC +F K +
Sbjct: 153 YKVYIIDEVHMLSTSAFNALLKTLEEPPEHAKFIFATTEIRKVPVTVLSRCQRFDLKRID 212
Query: 215 RENVIKRLREIC 250
RE + L IC
Sbjct: 213 REVLTDHLDRIC 224
>UniRef50_A0LM15 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Syntrophobacter fumaroxidans MPOB|Rep: DNA
polymerase III, subunits gamma and tau - Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB)
Length = 602
Score = 37.5 bits (83), Expect = 0.32
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +2
Query: 20 RPCPS-YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKF 196
RP S YK+ I+DE +TT A AL F +I I SRC +F
Sbjct: 114 RPAKSRYKVYIIDEVHMLTTEAFNALLKTLEEPPEHVVFIFATTEPHKIPATILSRCQRF 173
Query: 197 RFKPLARENVIKRLREI 247
F+ + ++ LR I
Sbjct: 174 DFRRIPSHMLVDHLRHI 190
>UniRef50_A0GXK7 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Chloroflexus|Rep: DNA polymerase III, subunits
gamma and tau - Chloroflexus aggregans DSM 9485
Length = 613
Score = 37.5 bits (83), Expect = 0.32
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +2
Query: 5 KRADGRPCPS-YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITS 181
+R RP + K+ I+DEA ++TAA AL F L V ++ I S
Sbjct: 110 ERVQFRPSVARMKVYIIDEAHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILS 169
Query: 182 RCSKFRFKPLARENVIKRLREICEAKTWMLVK 277
RC +F F + ++ +R I A+ +LV+
Sbjct: 170 RCQRFTFVRHSVTSMAAHVRRIAAAEGIVLVE 201
>UniRef50_Q661F8 Cluster: DNA polymerase III, subunits gamma and
tau; n=7; Borrelia burgdorferi group|Rep: DNA polymerase
III, subunits gamma and tau - Borrelia garinii
Length = 560
Score = 37.1 bits (82), Expect = 0.42
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
Y++ I+DE ++ +A AL F ++ I SRC F FK L+
Sbjct: 121 YRIYIIDEVHMLSNSAFNALLKTIEEPPNYIVFIFATTESHKLPETIKSRCQHFSFKLLS 180
Query: 215 RENVIKRLREIC 250
E + L+++C
Sbjct: 181 LEKIYNMLKKVC 192
>UniRef50_Q2Y982 Cluster: DNA polymerase III, delta prime subunit;
n=1; Nitrosospira multiformis ATCC 25196|Rep: DNA
polymerase III, delta prime subunit - Nitrosospira
multiformis (strain ATCC 25196 / NCIMB 11849)
Length = 368
Score = 37.1 bits (82), Expect = 0.42
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRC 187
YK++++ A++M+TAA +AL F LI + ++P I SRC
Sbjct: 149 YKIILIHPAETMSTAAASALLKNLEEPPLQTLFILITHQAQYLLPTIRSRC 199
>UniRef50_Q2GDS0 Cluster: Putative DNA polymerase III, gamma/tau
subunit; n=1; Neorickettsia sennetsu str. Miyayama|Rep:
Putative DNA polymerase III, gamma/tau subunit -
Neorickettsia sennetsu (strain Miyayama)
Length = 396
Score = 37.1 bits (82), Expect = 0.42
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK I+DE ++ +A +AL F L + +I I SRC +R L+
Sbjct: 120 YKSYIVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLS 179
Query: 215 RENVIKRLREICE 253
R + +RL ++ E
Sbjct: 180 RVVIAERLTQVAE 192
>UniRef50_Q87N27 Cluster: DNA polymerase III, delta prime subunit;
n=8; Vibrio|Rep: DNA polymerase III, delta prime subunit
- Vibrio parahaemolyticus
Length = 320
Score = 36.7 bits (81), Expect = 0.56
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
Y+L +++ AD+M +A AL F L+ + R++P I SRC + P +
Sbjct: 109 YRLFVIEPADAMNESASNALLKTLEEPGEKCLFLLVTHNQERLLPTIRSRCQHWVVTPPS 168
Query: 215 RENVIKRLRE 244
+ ++ + E
Sbjct: 169 TDQAMQWIGE 178
>UniRef50_Q7VRB7 Cluster: DNA polymerase III subunit gamma; n=2;
Candidatus Blochmannia|Rep: DNA polymerase III subunit
gamma - Blochmannia floridanus
Length = 541
Score = 36.7 bits (81), Expect = 0.56
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+ ++DE ++ + AL F L+ ++ I SRC +F FKPL
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPKHVKFILVTTEYQKLPETILSRCLQFYFKPLN 179
Query: 215 RENVIKRLREIC 250
++ +L+ IC
Sbjct: 180 IIQIVTQLKYIC 191
>UniRef50_Q74AW9 Cluster: DNA polymerase III, delta prime subunit;
n=5; Geobacter|Rep: DNA polymerase III, delta prime
subunit - Geobacter sulfurreducens
Length = 323
Score = 36.7 bits (81), Expect = 0.56
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K I+D+AD + AA AL L+ + I+P + SRC RF PL
Sbjct: 107 KACIIDDADRLNPAAANALLKTLEEPPGNALLILLTTNPAGILPTVRSRCQLLRFSPLP- 165
Query: 218 ENVIK 232
E VI+
Sbjct: 166 ERVIE 170
>UniRef50_Q7CZ44 Cluster: AGR_C_2759p; n=6; Rhizobiaceae|Rep:
AGR_C_2759p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 350
Score = 36.7 bits (81), Expect = 0.56
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
++++VI+D AD + A A+ F ++ + +++P I SRC R PL
Sbjct: 145 NWRIVIIDPADDLNRNAANAILKILEEPPKRAMFLVLSHAPGKLLPTIRSRCMPLRLLPL 204
Query: 212 ARENVIKRLREI 247
+ +++ L ++
Sbjct: 205 SDAAMVQALDQL 216
>UniRef50_Q4AHZ6 Cluster: DNA-directed DNA polymerase; n=1;
Chlorobium phaeobacteroides BS1|Rep: DNA-directed DNA
polymerase - Chlorobium phaeobacteroides BS1
Length = 613
Score = 36.7 bits (81), Expect = 0.56
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++ AA A F L +IIP I SRC F F+ +
Sbjct: 122 YKVYIIDEVHMLSQAAFNAFLKTLEEPPAYAKFILATTEKHKIIPTILSRCQIFDFRRIM 181
Query: 215 RENVIKRL 238
E++ + L
Sbjct: 182 VEDIAQHL 189
>UniRef50_Q0S8Z6 Cluster: DNA polymerase III subunit; n=12;
Corynebacterineae|Rep: DNA polymerase III subunit -
Rhodococcus sp. (strain RHA1)
Length = 753
Score = 36.7 bits (81), Expect = 0.56
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 8 RADGRPCPS-YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSR 184
RA P S Y++ I+DEA +TTA AL F +++P I SR
Sbjct: 109 RAFYAPAESRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR 168
Query: 185 CSKFRFKPLARENVIKRLREICEAKT 262
+ F+ LA + L +IC+ ++
Sbjct: 169 THHYPFRLLAPATMRGLLEKICQQES 194
>UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1;
Methanospirillum hungatei JF-1|Rep: Replication factor C
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 331
Score = 36.7 bits (81), Expect = 0.56
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+++ ++A +++ Q AL F S +IPPI SRC F PL+
Sbjct: 120 FKVMLFEDAHALSHDIQHALRRTMERYSNTCRFIFCTTQASTLIPPIKSRCLPLFFTPLS 179
Query: 215 RE 220
R+
Sbjct: 180 RD 181
>UniRef50_Q927D7 Cluster: DnaX protein; n=17; Bacillales|Rep: DnaX
protein - Listeria innocua
Length = 579
Score = 36.3 bits (80), Expect = 0.74
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++T A AL F L ++ I SR +F FK +
Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRIT 179
Query: 215 RENVIKRLREICE 253
+++I RL+ I E
Sbjct: 180 TQDIIGRLKFILE 192
>UniRef50_Q8XHN4 Cluster: DNA polymerase III delta' subunit; n=3;
Clostridium perfringens|Rep: DNA polymerase III delta'
subunit - Clostridium perfringens
Length = 307
Score = 36.3 bits (80), Expect = 0.74
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K++I+ + +T AAQ AL ++ + + I+ I SRC R PL++
Sbjct: 89 KVIIIHNGEKLTVAAQNALLKTIEEPLTGIFIIILSSNIDSILETIRSRCQIHRLAPLSK 148
Query: 218 ENV 226
E +
Sbjct: 149 EEI 151
>UniRef50_Q7MUS1 Cluster: DNA polymerase III, gamma and tau
subunits; n=1; Porphyromonas gingivalis|Rep: DNA
polymerase III, gamma and tau subunits - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 602
Score = 36.3 bits (80), Expect = 0.74
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++ A A F L +I+P I SRC F FK +
Sbjct: 123 YKIYIIDEVHMLSQQAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQIFDFKRIP 182
Query: 215 RENVIKRLREICEAK 259
+ + LR + +++
Sbjct: 183 PARIEQHLRYVADSE 197
>UniRef50_Q2STA6 Cluster: DNA polymerase III gamma-tau subunits;
n=2; Mycoplasma|Rep: DNA polymerase III gamma-tau
subunits - Mycoplasma capricolum subsp. capricolum
(strain California kid / ATCC27343 / NCTC 10154)
Length = 669
Score = 36.3 bits (80), Expect = 0.74
Identities = 22/81 (27%), Positives = 35/81 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +T A AL F L ++I I SRC F F +
Sbjct: 122 YKVYIIDEVHMLTKQAFNALLKTLEEPPVYTIFILATTEFNKIPQTILSRCQIFNFTKID 181
Query: 215 RENVIKRLREICEAKTWMLVK 277
+ ++ RL+ I + + + K
Sbjct: 182 KNSLKNRLQYIVNQENYQIEK 202
>UniRef50_O67486 Cluster: Putative uncharacterized protein; n=1;
Aquifex aeolicus|Rep: Putative uncharacterized protein -
Aquifex aeolicus
Length = 305
Score = 36.3 bits (80), Expect = 0.74
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K++I+D+A +MT+ A AL F L N S I+P I SR + FK +
Sbjct: 128 KVIIIDDAHAMTSQAANALLKVLEEPPADTTFILTTNRRSAILPTILSRTFQVEFKGFSV 187
Query: 218 ENVIK 232
+ V++
Sbjct: 188 KEVME 192
>UniRef50_Q1K472 Cluster: DNA polymerase III, subunits gamma and
tau; n=4; Desulfuromonadales|Rep: DNA polymerase III,
subunits gamma and tau - Desulfuromonas acetoxidans DSM
684
Length = 597
Score = 36.3 bits (80), Expect = 0.74
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++ A AL F +I I SRC +F F+ +
Sbjct: 120 YKIFIIDEVHMLSINAFNALLKTLEEPPEHVKFIFATTEPHKIPVTILSRCQRFDFRKIP 179
Query: 215 RENVIKRLREICEAK 259
V+ +LR I +A+
Sbjct: 180 APKVVAQLRRIVDAE 194
>UniRef50_A6NU34 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 596
Score = 36.3 bits (80), Expect = 0.74
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
++ I+DE ++TAA AL F L + ++ I SRC +F FK +
Sbjct: 120 RVYIVDEVHMLSTAAFNALLKILEEPPEHLMFILATTELHKVPATIKSRCQQFAFKRILP 179
Query: 218 ENVIKRLREICE 253
++ +RL + E
Sbjct: 180 GDIARRLSYVAE 191
>UniRef50_A5KMD2 Cluster: Putative uncharacterized protein; n=3;
Clostridiales|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 331
Score = 36.3 bits (80), Expect = 0.74
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 20 RPCPS-YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKF 196
RP S YK+ I+ +AD M+ AQ AL L+ ++P I SRC
Sbjct: 107 RPYSSKYKIYIIADADMMSVEAQNALLKTIEEPPEYAVIMLLTENAETLLPTIRSRCVMM 166
Query: 197 RFKPLARENVIKRLREICE 253
+ + + + V K L E E
Sbjct: 167 KLRNIKDQLVKKYLMEQLE 185
>UniRef50_A1W8D6 Cluster: DNA polymerase III, subunits gamma and
tau; n=13; cellular organisms|Rep: DNA polymerase III,
subunits gamma and tau - Acidovorax sp. (strain JS42)
Length = 679
Score = 36.3 bits (80), Expect = 0.74
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+ ++DE +T A A+ F L ++ + SRC +F +P+A
Sbjct: 125 FKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMA 184
Query: 215 RENVIKRLREICEAK 259
E V++ L + A+
Sbjct: 185 PETVLEHLTRVLAAE 199
>UniRef50_A0UY99 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Firmicutes|Rep: DNA polymerase III, subunits
gamma and tau - Clostridium cellulolyticum H10
Length = 280
Score = 36.3 bits (80), Expect = 0.74
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +++ A AL F L ++ I SRC +F FK +
Sbjct: 120 YKVYIIDEVHMLSSGAFNALLKTLEEPPGHVVFILATTDPHKLPATILSRCQRFDFKKIT 179
Query: 215 RENVIKRLREICEA 256
+ +R++ I +A
Sbjct: 180 PAGIAERVKLIAQA 193
>UniRef50_Q9KQI3 Cluster: DNA polymerase III, delta prime subunit;
n=16; Vibrio cholerae|Rep: DNA polymerase III, delta
prime subunit - Vibrio cholerae
Length = 324
Score = 35.9 bits (79), Expect = 0.98
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSK 193
Y+L++++ AD+M ++ AL F L+ + + ++P I SRC +
Sbjct: 112 YRLIVIEPADAMNESSANALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRCQR 164
>UniRef50_Q5L3X6 Cluster: DNA-directed DNA polymerase III gamma and
tau subunits; n=2; Geobacillus|Rep: DNA-directed DNA
polymerase III gamma and tau subunits - Geobacillus
kaustophilus
Length = 559
Score = 35.9 bits (79), Expect = 0.98
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++ A AL F L +I I SRC +F F+ +
Sbjct: 120 YKVYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPTTIISRCQRFDFRRIP 179
Query: 215 RENVIKRLREICEAK 259
++ RL+ + A+
Sbjct: 180 LPAIVSRLKYVASAQ 194
>UniRef50_A7GZC8 Cluster: Protein EbsC; n=13; Campylobacter|Rep:
Protein EbsC - Campylobacter curvus 525.92
Length = 553
Score = 35.9 bits (79), Expect = 0.98
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +T A AL F L ++ + SR FRFK +
Sbjct: 118 YKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQIG 177
Query: 215 RENVIKRLREI 247
+ ++IK L I
Sbjct: 178 KNSIIKHLEFI 188
>UniRef50_A1I9Q5 Cluster: DNA-directed DNA polymerase; n=1;
Candidatus Desulfococcus oleovorans Hxd3|Rep:
DNA-directed DNA polymerase - Candidatus Desulfococcus
oleovorans Hxd3
Length = 332
Score = 35.9 bits (79), Expect = 0.98
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
+ VI+ +A +M A AL F L + S ++P + SRC RF P++
Sbjct: 117 RAVIISDAWAMNPEAANALLKSLEEPPPQTLFFLTAEHASDLLPTVVSRCRHIRFAPVSA 176
Query: 218 ENVIKRLRE 244
+ + L++
Sbjct: 177 DRIAAFLQQ 185
>UniRef50_A0L8T4 Cluster: DNA polymerase III, delta prime subunit;
n=1; Magnetococcus sp. MC-1|Rep: DNA polymerase III,
delta prime subunit - Magnetococcus sp. (strain MC-1)
Length = 343
Score = 35.9 bits (79), Expect = 0.98
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ ++DE M +A AL L ++P I SRC RF PL
Sbjct: 122 YKVAVIDEVSLMNASAANALLKTLEEPPPHSLLILTTCTPGALLPTIRSRCQAVRFVPLD 181
Query: 215 RENVIKRLRE 244
+ + + LR+
Sbjct: 182 EQTLGQLLRQ 191
>UniRef50_UPI0000499373 Cluster: activator 1 subunit; n=2; Entamoeba
histolytica HM-1:IMSS|Rep: activator 1 subunit -
Entamoeba histolytica HM-1:IMSS
Length = 345
Score = 35.5 bits (78), Expect = 1.3
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
++++++ +AD +T AQ +L F L C +I PI SRC R PL
Sbjct: 147 FRVIMIFDADHLTNEAQQSLRRTMETGSEVCRFILFCTNPCSVIQPIRSRCVMIRV-PLP 205
Query: 215 RENVIKRLRE 244
+ + ++ E
Sbjct: 206 NKQEMTKIVE 215
>UniRef50_Q7NAN5 Cluster: DnaX; n=1; Mycoplasma gallisepticum|Rep:
DnaX - Mycoplasma gallisepticum
Length = 624
Score = 35.5 bits (78), Expect = 1.3
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
S K+ ILDEA ++ A AL F +I + SRC F FK L
Sbjct: 140 SKKVYILDEAHMLSNGAWNALLKTLEEPPKHVVFIFATTEFHKIPLTVVSRCQSFNFKKL 199
Query: 212 ARENVIKRLREI 247
+++++ L+ +
Sbjct: 200 DKDDLVDVLKNV 211
>UniRef50_Q74GZ9 Cluster: DNA polymerase III, gamma and tau
subunits; n=4; Deltaproteobacteria|Rep: DNA polymerase
III, gamma and tau subunits - Geobacter sulfurreducens
Length = 579
Score = 35.5 bits (78), Expect = 1.3
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++T A AL F ++ I SRC +F F+ +
Sbjct: 120 YKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIP 179
Query: 215 RENVIKRLREICE 253
V+ RLR I +
Sbjct: 180 LAKVVARLRYIVD 192
>UniRef50_Q6MDZ7 Cluster: Probable DNA-directed DNA polymerase III
subunits gamma/tau dnaX; n=1; Candidatus Protochlamydia
amoebophila UWE25|Rep: Probable DNA-directed DNA
polymerase III subunits gamma/tau dnaX - Protochlamydia
amoebophila (strain UWE25)
Length = 522
Score = 35.5 bits (78), Expect = 1.3
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +T A AL F +++P I SRC +F +
Sbjct: 122 YKVYIIDEVHMLTKEAFNALLKTLEEPPPKVKFIFATTEAHKVLPTILSRCQRFNLSRIP 181
Query: 215 RENVIKRLREICE 253
++ +L+ I +
Sbjct: 182 LSQIMIKLKLIAD 194
>UniRef50_Q2LUA9 Cluster: DNA polymerase III, gamma subunit; n=1;
Syntrophus aciditrophicus SB|Rep: DNA polymerase III,
gamma subunit - Syntrophus aciditrophicus (strain SB)
Length = 329
Score = 35.5 bits (78), Expect = 1.3
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
++ IL +AD + AA AL L+ + ++ I SRC + RF PLA+
Sbjct: 114 RVAILVDADRLNNAAANALLKTLEEPSPANILILVTDRPYQLPITILSRCQQIRFNPLAQ 173
Query: 218 ENVIKRLRE 244
E V L E
Sbjct: 174 EIVTTLLHE 182
>UniRef50_Q2BG76 Cluster: DNA polymerase III subunit delta; n=1;
Neptuniibacter caesariensis|Rep: DNA polymerase III
subunit delta - Neptuniibacter caesariensis
Length = 295
Score = 35.5 bits (78), Expect = 1.3
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRC 187
Y++V++D ADSM A+ AL L+ + + +++P I SRC
Sbjct: 113 YRVVVIDPADSMNIASANALLKMLEEPGSDTLLLLVTSKMGQVLPTIKSRC 163
>UniRef50_Q0GL66 Cluster: DNA polymerase III, subunits gamma and
tau; n=10; Lactobacillales|Rep: DNA polymerase III,
subunits gamma and tau - Lactobacillus reuteri
Length = 611
Score = 35.5 bits (78), Expect = 1.3
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++T A AL F L +I I SR +F F+ ++
Sbjct: 120 YKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQRFDFRRIS 179
Query: 215 RENVIKRLREICEAK 259
E+ R++ I + K
Sbjct: 180 AEDAFNRMKYILDQK 194
>UniRef50_Q043K3 Cluster: Helicase subunit of the Holliday junction
resolvase related ATPase; n=1; Lactobacillus gasseri
ATCC 33323|Rep: Helicase subunit of the Holliday
junction resolvase related ATPase - Lactobacillus
gasseri (strain ATCC 33323 / DSM 20243)
Length = 429
Score = 35.5 bits (78), Expect = 1.3
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
P S+ L+I DE MTT Q L N + I+P + SRC F F
Sbjct: 93 PYQSFVLLI-DEIHRMTTTLQDFLLPYLENGRILLIGATTENPIMSIVPAVRSRCQIFEF 151
Query: 203 KPLARENV----IKRLREICEAK 259
K L+ E++ I+ L+E+ K
Sbjct: 152 KALSDEDIEQVLIRALKEVFHFK 174
>UniRef50_A4CK17 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Flavobacteriales|Rep: DNA polymerase III subunit
gamma/tau - Robiginitalea biformata HTCC2501
Length = 631
Score = 35.5 bits (78), Expect = 1.3
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++ AA A F L +IIP I SRC F F+ +
Sbjct: 120 YKVYIIDEVHMLSQAAFNAFLKTLEEPPRHAIFILATTEKHKIIPTILSRCQIFDFRRIT 179
Query: 215 RENVIKRLREICE 253
+ L+ I E
Sbjct: 180 VGDAASYLKYIAE 192
>UniRef50_A0M2F5 Cluster: DNA polymerase III subunit gamma/tau;
n=14; Bacteroidetes|Rep: DNA polymerase III subunit
gamma/tau - Gramella forsetii (strain KT0803)
Length = 653
Score = 35.5 bits (78), Expect = 1.3
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
+YK+ I+DE ++ +A A F L +IIP I SRC F FK +
Sbjct: 108 NYKVYIIDEVHMLSASAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQIFDFKRI 167
Query: 212 ARENVIKRLREICE 253
+ L I E
Sbjct: 168 TVTDAKNYLAHIAE 181
>UniRef50_UPI0000E0FA0C Cluster: DNA polymerase III subunit delta;
n=1; alpha proteobacterium HTCC2255|Rep: DNA polymerase
III subunit delta - alpha proteobacterium HTCC2255
Length = 298
Score = 35.1 bits (77), Expect = 1.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSK 193
K++I++ AD+MT +A AL L + + R++P I SRC K
Sbjct: 108 KILIIEHADTMTESAANALLKTLEEPSLNTFLLLTVSDIQRLLPTILSRCEK 159
>UniRef50_Q3AG11 Cluster: Putative DNA polymerase III, delta prime
subunit; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: Putative DNA polymerase III, delta prime
subunit - Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008)
Length = 267
Score = 35.1 bits (77), Expect = 1.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFR 199
S K+++L+E D MT A A + LI +++P I SRC K +
Sbjct: 93 SRKVIVLEEVDKMTLDAANAFLKTLEEPPAGVTYLLIATMPEKVLPTIHSRCQKVK 148
>UniRef50_O84190 Cluster: DNA Pol III Gamma and Tau; n=4;
Chlamydiaceae|Rep: DNA Pol III Gamma and Tau - Chlamydia
trachomatis
Length = 290
Score = 35.1 bits (77), Expect = 1.7
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+ EAD +T A +A F L+ R+ P I SRC FR P+
Sbjct: 96 YKIYIIYEADRITLDAISAFLKLLEDPPQYGMFILVSALPQRLPPTIRSRCVSFRI-PME 154
Query: 215 RENVIKR 235
+ ++ +
Sbjct: 155 EKTLVSK 161
>UniRef50_Q1PVI5 Cluster: Similar to DNA polymerase III clamp loader
small subunit; n=1; Candidatus Kuenenia
stuttgartiensis|Rep: Similar to DNA polymerase III clamp
loader small subunit - Candidatus Kuenenia
stuttgartiensis
Length = 354
Score = 35.1 bits (77), Expect = 1.7
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL- 211
+K+VI+++AD M A L LI + + I SRC RF PL
Sbjct: 118 HKIVIIEDADKMNEEASNCLLKTLEEPPLYAIILLIVTSLESVSETIKSRCQVVRFSPLS 177
Query: 212 --ARENVI 229
A EN++
Sbjct: 178 LKAMENIL 185
>UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and tau;
n=27; Bacteria|Rep: DNA polymerase III subunits gamma
and tau - Silicibacter sp. (strain TM1040)
Length = 608
Score = 35.1 bits (77), Expect = 1.7
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++T+A AL F + ++ + SRC +F + +
Sbjct: 139 YKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRIE 198
Query: 215 RENVIKRLREICEAK 259
E +I LR I ++
Sbjct: 199 PEVMIDLLRRIATSE 213
>UniRef50_A6QBX8 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Sulfurovum sp. NBC37-1|Rep: DNA polymerase III,
gamma/tau subunits - Sulfurovum sp. (strain NBC37-1)
Length = 666
Score = 35.1 bits (77), Expect = 1.7
Identities = 22/71 (30%), Positives = 30/71 (42%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +TT A AL F L ++ I SR FRFK +
Sbjct: 119 YKIFIIDEVHMLTTQAFNALLKTLEEPPDFVKFILATTDPLKLPATILSRTQHFRFKKIP 178
Query: 215 RENVIKRLREI 247
+ V+ L I
Sbjct: 179 QNLVLSHLEHI 189
>UniRef50_A3IDG6 Cluster: DNA polymerase III subunit delta'; n=1;
Bacillus sp. B14905|Rep: DNA polymerase III subunit
delta' - Bacillus sp. B14905
Length = 334
Score = 35.1 bits (77), Expect = 1.7
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K+ +L AD + TA+ + L+ + I+P I SRC +F+ + R
Sbjct: 113 KIYVLHHADRLNTASANMILKFLEEPDGEVTAILLTEQMQSILPTIRSRCQHIKFQKMPR 172
Query: 218 ENVIKRLRE 244
+++ L+E
Sbjct: 173 HVLLQHLQE 181
>UniRef50_P63976 Cluster: DNA polymerase III subunit gamma/tau;
n=10; Actinomycetales|Rep: DNA polymerase III subunit
gamma/tau - Mycobacterium bovis
Length = 578
Score = 35.1 bits (77), Expect = 1.7
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
Y++ I+DEA +TTA AL F +++P I SR + F+ L
Sbjct: 119 YRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLP 178
Query: 215 RENVIKRLREICE 253
+ L ICE
Sbjct: 179 PRTMRALLARICE 191
>UniRef50_Q8QNA1 Cluster: EsV-1-187; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-187 - Ectocarpus siliculosus virus 1
Length = 324
Score = 34.7 bits (76), Expect = 2.3
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K ++L A +++ AQA L L+ + SR+I P+ SRC R +
Sbjct: 116 HKTIVLRGAGNLSKQAQAGLRRTMEKFTASCRLVLVSTFASRVIEPLRSRCVLIRVPLPS 175
Query: 215 RENV 226
EN+
Sbjct: 176 AENL 179
>UniRef50_Q6YPV8 Cluster: DNA polymerase III, gamma/tau subunit;
n=3; Candidatus Phytoplasma asteris|Rep: DNA polymerase
III, gamma/tau subunit - Onion yellows phytoplasma
Length = 482
Score = 34.7 bits (76), Expect = 2.3
Identities = 22/81 (27%), Positives = 35/81 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +T A AL F LI + +I I SR F F+ L
Sbjct: 105 YKVYIIDEVHVLTPNAFNALLKILEEPPEHVVFILITTEIYKIPDTIFSRAQSFAFENLN 164
Query: 215 RENVIKRLREICEAKTWMLVK 277
+N+ +L +I + + +
Sbjct: 165 LKNITAQLTKIAALENMFITE 185
>UniRef50_Q601S8 Cluster: DNA polymerase III gamma-tau subunits;
n=5; Mycoplasma hyopneumoniae|Rep: DNA polymerase III
gamma-tau subunits - Mycoplasma hyopneumoniae (strain
232)
Length = 726
Score = 34.7 bits (76), Expect = 2.3
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ ILDE ++T+A A F L V +I I SR ++ F L
Sbjct: 126 YKIYILDEVHMLSTSAFNAFLKTLEEPPKHMIFILATTEVHKIPLTILSRVQRYNFLALK 185
Query: 215 RENVIKRLREICE 253
+ + RL I E
Sbjct: 186 EDEICHRLEFILE 198
>UniRef50_Q2GE30 Cluster: Putative uncharacterized protein; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: Putative
uncharacterized protein - Neorickettsia sennetsu (strain
Miyayama)
Length = 266
Score = 34.7 bits (76), Expect = 2.3
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K++I+ + MT A AL LI Y+ +I + SRC F PL
Sbjct: 80 KIIIISHFEIMTAGAANALLKVLEEGKQTATLILIARYLQQITNTVRSRCFHLYFPPLKE 139
Query: 218 ENVIKRL 238
I++L
Sbjct: 140 NTEIEKL 146
>UniRef50_Q03ZG9 Cluster: DNA polymerase III, gamma/tau subunit;
n=1; Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293|Rep: DNA polymerase III, gamma/tau subunit -
Leuconostoc mesenteroides subsp. mesenteroides (strain
ATCC 8293 /NCDO 523)
Length = 575
Score = 34.7 bits (76), Expect = 2.3
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +++ A AL F L +I I SR +F FK +
Sbjct: 109 YKIYIIDEVHMLSSGAFNALLKTLEEPPANVKFILATTEPQKIPATILSRTQRFEFKRID 168
Query: 215 RENVIKRLREICE 253
+ + R+ EI +
Sbjct: 169 NDTIQARMAEILQ 181
>UniRef50_A4B798 Cluster: DNA polymerase III subunit delta; n=1;
Alteromonas macleodii 'Deep ecotype'|Rep: DNA polymerase
III subunit delta - Alteromonas macleodii 'Deep ecotype'
Length = 295
Score = 34.7 bits (76), Expect = 2.3
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSK 193
K++++ +AD+MT AA AL LI + V++++P I SRC +
Sbjct: 107 KVLLIPKADTMTEAAANALLKTLEEPTNNTFLLLITDSVNKLMPTILSRCER 158
>UniRef50_Q4UBG2 Cluster: Replication factor c-related protein,
putative; n=1; Theileria annulata|Rep: Replication
factor c-related protein, putative - Theileria annulata
Length = 961
Score = 34.7 bits (76), Expect = 2.3
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 41 LVILDEADSMTTAAQAALXXXXXXXXXXXX-FCLICN-YVSRIIPPITSRCSKFRFKPLA 214
L+ILDE D M+T + L LICN +S+ + ++++C RF
Sbjct: 593 LLILDEVDGMSTGDKGGLQAISDLIDITKCPIILICNDRLSQKMSALSNKCLDLRFTSPP 652
Query: 215 RENVIKRLREICE 253
+ +KR+ EIC+
Sbjct: 653 IDLYMKRMNEICK 665
>UniRef50_A0B6D7 Cluster: Replication factor C large subunit; n=1;
Methanosaeta thermophila PT|Rep: Replication factor C
large subunit - Methanosaeta thermophila (strain DSM
6194 / PT) (Methanothrixthermophila (strain DSM 6194 /
PT))
Length = 467
Score = 34.7 bits (76), Expect = 2.3
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +2
Query: 38 KLVILDEADSM--TTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
+LVILDEAD++ T A LI N I P+ C +F+ +
Sbjct: 100 RLVILDEADNLHGTYDRGGAAAILRVIKNATQPVILIANEYYNIEKPLRDACRGVQFRSI 159
Query: 212 ARENVIKRLREICEAK 259
+ + LREIC ++
Sbjct: 160 RAQTIASLLREICRSE 175
>UniRef50_P37540 Cluster: DNA polymerase III subunit delta'; n=8;
Bacillaceae|Rep: DNA polymerase III subunit delta' -
Bacillus subtilis
Length = 329
Score = 34.7 bits (76), Expect = 2.3
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
KL I+ AD MT A +L LI R++ I SRC F+PL
Sbjct: 112 KLYIISHADQMTANAANSLLKFLEEPNKDTMAVLITEQPQRLLDTIISRCQTLPFQPLQP 171
Query: 218 ENVIKRLRE 244
+ + RL E
Sbjct: 172 KAIEDRLIE 180
>UniRef50_Q8DT16 Cluster: DNA polymerase III, gamma/tau subunit;
n=44; Streptococcus|Rep: DNA polymerase III, gamma/tau
subunit - Streptococcus mutans
Length = 558
Score = 34.3 bits (75), Expect = 3.0
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
+YK+ I+DE ++T A AL F L + +I I SR +F FK +
Sbjct: 118 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAI 177
Query: 212 ARENVIKRLREI 247
+ + + L +I
Sbjct: 178 KTKAIKEHLADI 189
>UniRef50_Q73K31 Cluster: DNA polymerase III, gamma and tau
subunits, putative; n=1; Treponema denticola|Rep: DNA
polymerase III, gamma and tau subunits, putative -
Treponema denticola
Length = 612
Score = 34.3 bits (75), Expect = 3.0
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++T+A AL F + ++ I SRC +F FK ++
Sbjct: 120 YKIYIIDEVHMLSTSAFNALLKTIEEPPPYVVFIFATTEIHKVPATIKSRCQQFNFKLVS 179
Query: 215 RE 220
E
Sbjct: 180 IE 181
>UniRef50_Q2RTP3 Cluster: DNA-directed DNA polymerase; n=1;
Rhodospirillum rubrum ATCC 11170|Rep: DNA-directed DNA
polymerase - Rhodospirillum rubrum (strain ATCC 11170 /
NCIB 8255)
Length = 374
Score = 34.3 bits (75), Expect = 3.0
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
+++VI+D A+ M A AL L+ + +R++P I SRC + +PL
Sbjct: 146 WRVVIVDGAEDMNRNAANALLKGLEEPPGRALLLLVSHNPARLLPTIRSRCRRLALRPL 204
>UniRef50_Q1MPV7 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Lawsonia intracellularis PHE/MN1-00|Rep: DNA
polymerase III, gamma/tau subunits - Lawsonia
intracellularis (strain PHE/MN1-00)
Length = 574
Score = 34.3 bits (75), Expect = 3.0
Identities = 21/68 (30%), Positives = 28/68 (41%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DEA +T + AL F + I SRC F KPL
Sbjct: 120 YKVFIIDEAHMLTRESFNALLKTLEEPPPFSTFVFATTEPHKFPVTIISRCQHFVLKPLT 179
Query: 215 RENVIKRL 238
+E +I L
Sbjct: 180 KEELIYNL 187
>UniRef50_Q0B0W5 Cluster: DNA-directed DNA polymerase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
DNA-directed DNA polymerase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 499
Score = 34.3 bits (75), Expect = 3.0
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K+ I+DE +TT A AL F L +I I SRC + F+ L
Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTIEEPPDAVIFILATTESHKIPATIRSRCQVYNFRRLTT 180
Query: 218 ENVIKRLREI 247
+ +RL ++
Sbjct: 181 AEITERLSDV 190
>UniRef50_A5IZC8 Cluster: DNA polymerase III subunit gamma and TAU;
n=1; Mycoplasma agalactiae|Rep: DNA polymerase III
subunit gamma and TAU - Mycoplasma agalactiae
Length = 614
Score = 34.3 bits (75), Expect = 3.0
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
+YK+ I+DE ++ A AL F +I I SR +F F+ +
Sbjct: 117 NYKIYIIDEVHMLSKGAFNALLKTLEEPPAHVIFIFATTDPQKIPLTILSRVQRFNFRRM 176
Query: 212 ARENVIKRLREICE 253
+ + ++K+++ I E
Sbjct: 177 SNDTLVKQIKSILE 190
>UniRef50_A5CF91 Cluster: DNA polymerase III gamma and tau chains;
n=1; Orientia tsutsugamushi Boryong|Rep: DNA polymerase
III gamma and tau chains - Orientia tsutsugamushi
(strain Boryong) (Rickettsia tsutsugamushi)
Length = 559
Score = 34.3 bits (75), Expect = 3.0
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++ +A AL F +++I + SRC KF + L
Sbjct: 129 YKIFIIDEVHMLSKSAFNALLKLLEEPPSHTIFIFATTEINKIPLTVISRCQKFDLRRLD 188
Query: 215 RENVIKRLREI 247
N+++ L I
Sbjct: 189 INNIVQILSNI 199
>UniRef50_Q9FK71 Cluster: Similarity to DNA polymerase III; n=3;
Arabidopsis thaliana|Rep: Similarity to DNA polymerase
III - Arabidopsis thaliana (Mouse-ear cress)
Length = 900
Score = 34.3 bits (75), Expect = 3.0
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +2
Query: 41 LVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLARE 220
++I D+ D+M+T L F L+C+ + + I SRC KF F L
Sbjct: 458 VLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDV 517
Query: 221 NVIKRLREI 247
++I L+ I
Sbjct: 518 DIIDSLQLI 526
>UniRef50_A6MVQ4 Cluster: DNA polymerase III; n=1; Rhodomonas
salina|Rep: DNA polymerase III - Rhodomonas salina
(Cryptomonas salina)
Length = 370
Score = 34.3 bits (75), Expect = 3.0
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DEA ++ A +L F L V++I I SRC K F+P+
Sbjct: 121 YKVCIIDEAHMLSINAFNSLLKTLESPPINTVFILSTTAVNKIPNTIISRCQKLYFQPIR 180
Query: 215 RENVI 229
++I
Sbjct: 181 DHDLI 185
>UniRef50_Q9KT51 Cluster: DNA polymerase III, subunits gamma and
tau; n=17; Vibrio|Rep: DNA polymerase III, subunits
gamma and tau - Vibrio cholerae
Length = 692
Score = 33.9 bits (74), Expect = 3.9
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+ ++DE ++ + AL F L ++ I SRC +F KP++
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPIS 179
Query: 215 RENVIKRLREICEAK 259
EN+ ++L ++ A+
Sbjct: 180 VENIQQQLDKVLHAE 194
>UniRef50_Q8A7B5 Cluster: DNA polymerase III subunit gamma/tau; n=6;
Bacteroidales|Rep: DNA polymerase III subunit gamma/tau
- Bacteroides thetaiotaomicron
Length = 619
Score = 33.9 bits (74), Expect = 3.9
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++ +A A F L +I+P I SRC + F ++
Sbjct: 122 YKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRIS 181
Query: 215 RENVIKRL 238
E+ + L
Sbjct: 182 VEDTVNHL 189
>UniRef50_Q899F8 Cluster: DNA polymerase III delta subunit; n=1;
Clostridium tetani|Rep: DNA polymerase III delta subunit
- Clostridium tetani
Length = 322
Score = 33.9 bits (74), Expect = 3.9
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K++I+ +D MT AQ A +IC + I+ I SRC ++ L+
Sbjct: 101 KVIIIYNSDLMTKEAQNAFLKTIEEPPENVFILMICESLDNILETIKSRCQIYKLNHLSE 160
Query: 218 ENV 226
E++
Sbjct: 161 EDM 163
>UniRef50_Q7V9L4 Cluster: DNA polymerase III gamma/tau subunit; n=4;
Prochlorococcus marinus|Rep: DNA polymerase III
gamma/tau subunit - Prochlorococcus marinus
Length = 559
Score = 33.9 bits (74), Expect = 3.9
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+ ++DE ++TAA AL F L R++ I SRC +F F+ +
Sbjct: 124 WKVYVIDECHMLSTAAFNALLKTLEEPPSQTVFVLATTDPQRLLQTILSRCQRFDFRRIP 183
Query: 215 RENVIKRLREI 247
++ L I
Sbjct: 184 ITSLTSHLTTI 194
>UniRef50_Q6KIL7 Cluster: DNA polymerase III subunit gamma and tau;
n=1; Mycoplasma mobile|Rep: DNA polymerase III subunit
gamma and tau - Mycoplasma mobile
Length = 720
Score = 33.9 bits (74), Expect = 3.9
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DEA +T +A AL F L +I + SR +F FK +
Sbjct: 117 YKVYIIDEAHMLTKSAFNALLKTLEEPPKHAIFILATTDPQKIPLTVISRVQRFNFKRIT 176
Query: 215 RENVIKRLREI 247
+ K+L+E+
Sbjct: 177 LPILEKQLQEV 187
>UniRef50_Q2SIX1 Cluster: DNA polymerase III, gamma/tau subunit;
n=1; Hahella chejuensis KCTC 2396|Rep: DNA polymerase
III, gamma/tau subunit - Hahella chejuensis (strain KCTC
2396)
Length = 735
Score = 33.9 bits (74), Expect = 3.9
Identities = 17/75 (22%), Positives = 34/75 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ ++DE ++ ++ AL F L ++ I SRC +F K L+
Sbjct: 120 YKIYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFNLKNLS 179
Query: 215 RENVIKRLREICEAK 259
+ ++ L + +A+
Sbjct: 180 PQRIVSHLTHVLQAE 194
>UniRef50_Q41AZ0 Cluster: DNA-directed DNA polymerase; n=1;
Exiguobacterium sibiricum 255-15|Rep: DNA-directed DNA
polymerase - Exiguobacterium sibiricum 255-15
Length = 561
Score = 33.9 bits (74), Expect = 3.9
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
+YK+ I+DE ++T A AL F L +I I SRC +F K
Sbjct: 119 AYKVYIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRCQRFDVKRH 178
Query: 212 ARENVIKRLREICEAKT 262
+ +++R++ I +T
Sbjct: 179 EVDQLMERMQYILSDQT 195
>UniRef50_A7M2L2 Cluster: Putative uncharacterized protein; n=2;
Bacteroides|Rep: Putative uncharacterized protein -
Bacteroides ovatus ATCC 8483
Length = 621
Score = 33.9 bits (74), Expect = 3.9
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++ +A A F L +I+P I SRC + F ++
Sbjct: 122 YKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFNRIS 181
Query: 215 RENVIKRL 238
E+ + L
Sbjct: 182 VEDTVNHL 189
>UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Roseiflexus|Rep: DNA polymerase III, subunits
gamma and tau - Roseiflexus sp. RS-1
Length = 599
Score = 33.9 bits (74), Expect = 3.9
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +2
Query: 5 KRADGRPCPSY-KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITS 181
+R RP + K+ I+DE ++TAA AL F L V ++ I S
Sbjct: 109 ERVQFRPAVARTKVYIIDEVHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILS 168
Query: 182 RCSKFRFKPLARENVIKRLREI 247
RC +F F ++ LR I
Sbjct: 169 RCQRFVFNRHTVASIAAHLRSI 190
>UniRef50_Q4A6Z5 Cluster: DNA polymerase III gamma and tau subunit;
n=1; Mycoplasma synoviae 53|Rep: DNA polymerase III
gamma and tau subunit - Mycoplasma synoviae (strain 53)
Length = 609
Score = 33.5 bits (73), Expect = 5.2
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++ +A AL F L V ++ I SR F F+ ++
Sbjct: 115 YKIYIIDEVHMLSKSAFNALLKTLEEPPSYVIFILATTDVQKVPITILSRVQSFNFRRIS 174
Query: 215 RENVIKRLREI 247
+ ++ +L I
Sbjct: 175 EKQIVAQLENI 185
>UniRef50_Q1QXJ7 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Chromohalobacter salexigens DSM 3043|Rep: DNA
polymerase III, subunits gamma and tau -
Chromohalobacter salexigens (strain DSM 3043 / ATCC
BAA-138 / NCIMB13768)
Length = 723
Score = 33.5 bits (73), Expect = 5.2
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ ++DE ++T + AL F L ++ + SRC +F K +
Sbjct: 120 YKVYLIDEVHMLSTHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFTLKNMP 179
Query: 215 RENVIKRLREICEAKT 262
E V+ L I +A++
Sbjct: 180 PERVVGHLSHILQAES 195
>UniRef50_Q2QW40 Cluster: ATPase, AAA family protein, expressed;
n=2; Oryza sativa|Rep: ATPase, AAA family protein,
expressed - Oryza sativa subsp. japonica (Rice)
Length = 1174
Score = 33.5 bits (73), Expect = 5.2
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YKL ++DE +++ +A F I + + SRC K+ F +
Sbjct: 516 YKLFVVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNLPRAVISRCQKYVFSKIK 575
Query: 215 RENVIKRLREIC 250
+++ RLR IC
Sbjct: 576 DIDIVCRLRRIC 587
>UniRef50_A2Q901 Cluster: Similarity to hypothetical ABC transporter
- Schizosaccharomyces pombe; n=1; Aspergillus niger|Rep:
Similarity to hypothetical ABC transporter -
Schizosaccharomyces pombe - Aspergillus niger
Length = 1206
Score = 33.5 bits (73), Expect = 5.2
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 274 EGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPE 414
EG +L+ D GDLR A+ A CQ G I DG+ + +V E
Sbjct: 375 EGHVLSILSDKDPGDLRNAIEAF--CQNDQGSINTDGIFRTSSMVME 419
>UniRef50_A5YSV5 Cluster: Replication factor C small subunit II;
n=4; Halobacteriaceae|Rep: Replication factor C small
subunit II - uncultured haloarchaeon
Length = 375
Score = 33.5 bits (73), Expect = 5.2
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRC 187
+YK V+LD A+++ Q AL F + + +IPPI SRC
Sbjct: 137 TYKTVLLDNAETIREDFQQALRRVMERYHKNTQFIIATRQPTTLIPPIRSRC 188
>UniRef50_Q9PR58 Cluster: DNA polymerase III gamma-tau subunits;
n=1; Ureaplasma parvum|Rep: DNA polymerase III gamma-tau
subunits - Ureaplasma parvum (Ureaplasma urealyticum
biotype 1)
Length = 597
Score = 33.1 bits (72), Expect = 6.9
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
YK+ I+DEA ++T+A AL F +I I SRC ++ FK L
Sbjct: 120 YKVYIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFKRL 178
>UniRef50_Q82X62 Cluster: DnaX; DNA polymerase III (Subunits tau and
gamma) protein; n=3; Betaproteobacteria|Rep: DnaX; DNA
polymerase III (Subunits tau and gamma) protein -
Nitrosomonas europaea
Length = 525
Score = 33.1 bits (72), Expect = 6.9
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ ++DE ++ +A A+ F L +I + SRC +F K +
Sbjct: 121 YKVYLIDEVHMLSRSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQIP 180
Query: 215 RENVIKRLREI 247
+++RL EI
Sbjct: 181 PSLIVERLTEI 191
>UniRef50_O83970 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Treponema pallidum|Rep: DNA polymerase III,
subunits gamma and tau - Treponema pallidum
Length = 572
Score = 33.1 bits (72), Expect = 6.9
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++ +A AL F V RI + SRC +F F+ +
Sbjct: 120 YKVFIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQFHFRLVD 179
Query: 215 RENVIKRLREICE 253
+ ++ L + +
Sbjct: 180 TQTLVCALAQAAQ 192
>UniRef50_A7INF3 Cluster: DNA-directed DNA polymerase; n=1;
Xanthobacter autotrophicus Py2|Rep: DNA-directed DNA
polymerase - Xanthobacter sp. (strain Py2)
Length = 347
Score = 33.1 bits (72), Expect = 6.9
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+++ I+D D + AL F LI + R++P I SR R +PL
Sbjct: 141 WRVCIVDAVDELNPFGANALLKTLEEPPPRALFLLISHAPGRVLPTIRSRTRLLRMRPLG 200
Query: 215 RENVIKRLREICE 253
+V+ L + E
Sbjct: 201 SADVLAALDHLKE 213
>UniRef50_A6EHG2 Cluster: DNA polymerase III, tau and gamma
subunits; n=1; Pedobacter sp. BAL39|Rep: DNA polymerase
III, tau and gamma subunits - Pedobacter sp. BAL39
Length = 624
Score = 33.1 bits (72), Expect = 6.9
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++ A A F L +I+P I SRC F F +
Sbjct: 122 YKIYIIDEVHMLSANAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQ 181
Query: 215 RENVIKRLREI 247
+++ L I
Sbjct: 182 VDDISSHLNRI 192
>UniRef50_A4B0N9 Cluster: DNA polymerase III subunits gamma and tau;
n=2; Bacteria|Rep: DNA polymerase III subunits gamma and
tau - Alteromonas macleodii 'Deep ecotype'
Length = 930
Score = 33.1 bits (72), Expect = 6.9
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ ++DE ++ + AL F L ++ I SRC +F K ++
Sbjct: 120 YKVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPITILSRCLQFNLKAMS 179
Query: 215 RENVIKRLREICE 253
RE ++ +L I +
Sbjct: 180 REQIVGQLTHILQ 192
>UniRef50_A0CKH6 Cluster: Chromosome undetermined scaffold_2, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_2,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1678
Score = 33.1 bits (72), Expect = 6.9
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Frame = +1
Query: 331 LTALQCCQRLYGRITADGLIEVTGLVPEKL----VNEYLSIKNYSELEEFVQNFLM-RAY 495
L QCCQRL+ I+ +VT ++ +++ NE L +K +S LEE V FLM R Y
Sbjct: 705 LKIAQCCQRLFQDISISDFTQVTKIILDEIDFEWKNEKLHLKCHS-LEE-VYGFLMERNY 762
Query: 496 SA 501
S+
Sbjct: 763 SS 764
>UniRef50_Q8Q084 Cluster: Replication factor C large subunit; n=4;
Methanosarcinaceae|Rep: Replication factor C large
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 610
Score = 33.1 bits (72), Expect = 6.9
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 38 KLVILDEADSM-TTAAQAAL-XXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
+L+ILDEAD++ TA + + LI N + + P + + C + +F +
Sbjct: 108 RLIILDEADNLHGTADRGGMRAISGIIKSTLQPIILIANDIYGLTPTVRNICLEIKFGSV 167
Query: 212 ARENVIKRLREICEAK 259
+++ L+++CE++
Sbjct: 168 QSRSMVPALKKVCESE 183
>UniRef50_UPI0000DAE784 Cluster: hypothetical protein
Rgryl_01001189; n=2; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01001189 - Rickettsiella
grylli
Length = 440
Score = 32.7 bits (71), Expect = 9.1
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 134 CLICNYVSRIIPPITSRCSK-FRFKPLARENVIKRLREICEAK-TWMLVKVRF 286
CL+ V ++ K ++F+P ++N +KRLR++C+ K TW + F
Sbjct: 191 CLLALLVWTVVRDSPETVLKGYKFQPPPKKNELKRLRQVCKNKQTWFIALYSF 243
>UniRef50_UPI000050FF03 Cluster: COG1530: Ribonucleases G and E;
n=1; Brevibacterium linens BL2|Rep: COG1530:
Ribonucleases G and E - Brevibacterium linens BL2
Length = 239
Score = 32.7 bits (71), Expect = 9.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 265 DVGEGEILNQAVDTCEGDLRRALTALQCCQRL 360
D G+GE VD CEGD+ R +TA + +++
Sbjct: 123 DHGDGECREHRVDCCEGDVERHITAEEMAEKV 154
>UniRef50_UPI0000499AAD Cluster: activator 1 subunit; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: activator 1 subunit -
Entamoeba histolytica HM-1:IMSS
Length = 316
Score = 32.7 bits (71), Expect = 9.1
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K +I+ EAD +T AQ A+ F I +S ++ P+ SRC R +
Sbjct: 121 KTLIIHEADKLTKEAQFAVRRAMETGNWRYVF--ITENISAMMKPLRSRCLDIRIELPTY 178
Query: 218 ENVIKRLREICE 253
+ V + + IC+
Sbjct: 179 DEVDRLITNICQ 190
>UniRef50_Q9ABG0 Cluster: DNA polymerase III, gamma and tau
subunits; n=5; Alphaproteobacteria|Rep: DNA polymerase
III, gamma and tau subunits - Caulobacter crescentus
(Caulobacter vibrioides)
Length = 608
Score = 32.7 bits (71), Expect = 9.1
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE ++TAA AL F + ++ I SRC +F + +
Sbjct: 177 YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRCQRFDLRRVE 236
Query: 215 RENVIKRLREI 247
+ ++K I
Sbjct: 237 PDVLVKHFDRI 247
>UniRef50_A6FHN9 Cluster: HolB; n=1; Moritella sp. PE36|Rep: HolB -
Moritella sp. PE36
Length = 323
Score = 32.7 bits (71), Expect = 9.1
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K+VI++ A+S A+ AL L+ S+++P I SRC K A
Sbjct: 108 KVVIIEHAESFNLASANALLKTLEEPSNGSYLILLAENKSQVLPTIYSRCQKLHLPAPAE 167
Query: 218 ENVIKRLREICEAKTWMLVKVR 283
+ + L++ ++ L +R
Sbjct: 168 QESMAWLQQQFPIESPTLTAIR 189
>UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Petrotoga mobilis SJ95|Rep: DNA polymerase
III, subunits gamma and tau - Petrotoga mobilis SJ95
Length = 467
Score = 32.7 bits (71), Expect = 9.1
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DE +T A AL F L + ++ I SR FK L
Sbjct: 119 YKVYIIDEFHMLTREAFNALLKTLEEPPSHVIFILATTNLEKVPDTIISRAQIINFKNLG 178
Query: 215 RENVIKRLREICEAK 259
+ +++ L+ I ++
Sbjct: 179 QNEIVEGLKNIASSE 193
>UniRef50_A4B943 Cluster: Putative uncharacterized protein; n=1;
Reinekea sp. MED297|Rep: Putative uncharacterized
protein - Reinekea sp. MED297
Length = 351
Score = 32.7 bits (71), Expect = 9.1
Identities = 18/67 (26%), Positives = 36/67 (53%)
Frame = +1
Query: 316 DLRRALTALQCCQRLYGRITADGLIEVTGLVPEKLVNEYLSIKNYSELEEFVQNFLMRAY 495
DL + L L+ LY R+ +GL + PEKL++++ ++ + L E+ ++++ R Y
Sbjct: 262 DLIKKLLTLRSDPGLYNRLQVNGLAKAYNYSPEKLIDDWRTLFEKTLLPEY-RSWMERPY 320
Query: 496 SASQLWN 516
+ N
Sbjct: 321 ITRSMVN 327
>UniRef50_A2RNZ7 Cluster: DNA polymerase III subunits gamma / tau;
n=3; Lactococcus lactis|Rep: DNA polymerase III subunits
gamma / tau - Lactococcus lactis subsp. cremoris (strain
MG1363)
Length = 553
Score = 32.7 bits (71), Expect = 9.1
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
+YK+ I+DE ++T A AL F L + +I I SR +F FK +
Sbjct: 119 TYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRVQRFAFKSI 178
Query: 212 ARENVIKRLREI 247
++ L +I
Sbjct: 179 TTADIRTYLGKI 190
>UniRef50_A1SDH6 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Actinomycetales|Rep: DNA polymerase III,
subunits gamma and tau - Nocardioides sp. (strain
BAA-499 / JS614)
Length = 678
Score = 32.7 bits (71), Expect = 9.1
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ I+DEA +TT AL F +++P I SR + F+ +
Sbjct: 123 YKVYIIDEAHMVTTQGFNALLKLVEEPPPHLRFIFATTEPDKVLPTIRSRTHHYPFRLIP 182
Query: 215 RENVIKRLREIC 250
+ L E+C
Sbjct: 183 PRLLSSYLSELC 194
>UniRef50_A4RWV3 Cluster: Predicted protein; n=8; Viridiplantae|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 355
Score = 32.7 bits (71), Expect = 9.1
Identities = 19/80 (23%), Positives = 32/80 (40%)
Frame = +2
Query: 14 DGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSK 193
D C +K+++L E D ++ AQ L LI SR++ + SRC
Sbjct: 125 DSDGCEGFKVLVLTEVDRLSREAQYGLRRTMEKYSASCRLFLIAERPSRVMDALQSRCLP 184
Query: 194 FRFKPLARENVIKRLREICE 253
R E + L ++ +
Sbjct: 185 VRVPGPRVEEIENLLHDVAK 204
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,305,449
Number of Sequences: 1657284
Number of extensions: 12913195
Number of successful extensions: 35692
Number of sequences better than 10.0: 252
Number of HSP's better than 10.0 without gapping: 34390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35670
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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