Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20665
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   2.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.8  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 634 CMNSDPPSSRRCRQTAVFSLMAHFCLFVR 548
           C+N D P    C+   VF  +   C +VR
Sbjct: 198 CINGDTPRRSGCKLGQVFDDVGKKCDWVR 226


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 6  KELMVDHVPHTNWSFWMKQ 62
          +++M    PHT W F + Q
Sbjct: 23 QQVMEPRSPHTAWQFGVSQ 41


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 556 FVRCPAATTVALNCSRAAMPNTLAS 482
           F  CP       N  R  MP+T+A+
Sbjct: 603 FTHCPEGFNEFYNQRRRWMPSTMAN 627


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 556 FVRCPAATTVALNCSRAAMPNTLAS 482
           F  CP       N  R  MP+T+A+
Sbjct: 836 FTHCPEGFNEFYNQRRRWMPSTMAN 860


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 556 FVRCPAATTVALNCSRAAMPNTLAS 482
           F  CP       N  R  MP+T+A+
Sbjct: 836 FTHCPEGFNEFYNQRRRWMPSTMAN 860


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,099
Number of Sequences: 336
Number of extensions: 3168
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)