Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20665
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 104 1e-23
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 75 8e-15
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 69 9e-13
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 27 2.6
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.5
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa... 27 3.5
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 4.6
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 4.6
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 8.0
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 25 8.0
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 8.0
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 104 bits (250), Expect = 1e-23
Identities = 47/80 (58%), Positives = 58/80 (72%)
Frame = +2
Query: 8 RADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRC 187
+ DG PCP +K++ILDEADSMT AQAAL FCLICNY++RII P++SRC
Sbjct: 115 KVDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRC 174
Query: 188 SKFRFKPLARENVIKRLREI 247
SK+RFKPL EN++KRL I
Sbjct: 175 SKYRFKPLDNENMVKRLEFI 194
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 75.4 bits (177), Expect = 8e-15
Identities = 32/76 (42%), Positives = 51/76 (67%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
++K++ILDEAD+MT AAQ AL FC+ICNY+++I P I SRC++FRF+PL
Sbjct: 120 TFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPL 179
Query: 212 ARENVIKRLREICEAK 259
+ + K + + +++
Sbjct: 180 PPKEIEKTVDHVIQSE 195
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 310 EGDLRRALTALQCCQRLYGRITADGLIEVTG 402
+GD+R+AL LQ C Y I + G
Sbjct: 212 KGDMRKALNILQACHAAYDHIDVSAIYNCVG 242
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 68.5 bits (160), Expect = 9e-13
Identities = 34/79 (43%), Positives = 46/79 (58%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
P +K++ILDEADSMT AQ AL F L CN ++II PI SRC+ R+
Sbjct: 116 PPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRY 175
Query: 203 KPLARENVIKRLREICEAK 259
L + V++RL IC+A+
Sbjct: 176 SRLTDQQVLQRLLNICKAE 194
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 158 RIIPPITSRCSKFRFKPLARENVIKRLREIC 250
R+ + SRC F K L R+NV K L C
Sbjct: 219 RLNSALISRCPVFVLKKLTRDNVKKILNHAC 249
>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 403 LVPEKLVNEYLS-IKNYSELEEFVQN-FLMRAYSASQLWNS*VPRLWRLDI*RINRNAP* 576
L+ KL NE+L +K ++ E + F ++ Y+ + V W L + I++ P
Sbjct: 17 LLKTKLKNEFLKGVKCITKYPENAHSIFKVQEYTGYKGVTFIVSTKWNLTVDSIHKLIPE 76
Query: 577 VRRRPSVCIV 606
++ PS C++
Sbjct: 77 IKSSPSACLL 86
>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 547 CPAATTVALNCSRAAMPNTL 488
C AAT + LNC +++ PN L
Sbjct: 268 CGAATDLTLNCLKSSPPNAL 287
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 4.6
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = -1
Query: 464 SSNSE*FLMLRYSLTNFSGTSPVTSISPSAVILPYNLWQHCSAVSALRRSPSQVSTAWFR 285
SSNS L S T + T T + + PY + + S + S S S + F
Sbjct: 476 SSNSSYTTTLTASNTTVTFTGTGTGSATATSSSPY--YSNSSIIVPTTVSTSG-SVSSFS 532
Query: 284 ISPSPTSTFS 255
SPSPTS+FS
Sbjct: 533 SSPSPTSSFS 542
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 502 MPNTLASGNSEQIPPILNSS 443
+PN L S IPPILNSS
Sbjct: 143 LPNHLTKTKSCSIPPILNSS 162
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 403 LVPEKLVNEYLSIKNYSELEEFVQNFLMRAYSASQLW 513
+VP++L + + Y +E V++FL+ AY S +W
Sbjct: 278 VVPKQLSEKRFA--KYVPTKEMVESFLLFAYGVSNVW 312
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 349 CQRLYGRITADGLIEVTGLVPEKLVNEYLSIKNYSELE 462
CQ Y ++ +E+ EK++NEYL ++ L+
Sbjct: 2352 CQVTYSKVDIPWSMELHAASVEKVLNEYLELQRRDLLQ 2389
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Frame = +3
Query: 501 IAALEQLSATVVAAGHLTNKQKCAISEKTAVCLHR--------LLDGGSEFMQLTDLG 650
I L+QL +AAG + + + AI E L L DGG + +Q+TD G
Sbjct: 9 IRPLDQLVINKIAAGEIIERPENAIKELIENSLDAGSTSIDVLLKDGGLKLLQITDNG 66
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 525 HSTVPELRCRIRSHQEILNKFLQF*IVLDA*VLINQFFRNKSS 397
H + + C S Q ++N LQ ++ D L+N +NK S
Sbjct: 18 HYAMTIVSCGFHSPQSLMNADLQHCLLADQNYLLNNSNKNKGS 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,230
Number of Sequences: 5004
Number of extensions: 55508
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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