Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20665
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0489 + 3872495-3872538,3872663-3872741,3872835-3872914,387... 94 8e-20
04_04_0840 + 28570642-28570809,28570919-28571025,28571137-285712... 63 2e-10
02_05_0922 - 32742863-32742958,32743081-32743136,32743253-327433... 60 1e-09
03_06_0267 - 32751431-32751489,32751600-32751645,32751886-327519... 36 0.024
12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570... 33 0.17
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281... 31 1.2
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381... 30 1.6
11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767... 30 1.6
09_06_0222 - 21655236-21655841 29 2.7
08_01_1033 - 10461135-10461377,10462124-10462354,10465853-104663... 28 8.4
05_01_0319 + 2503963-2504176,2504316-2504376,2504691-2504769,250... 28 8.4
04_03_0619 - 18079520-18079693,18081071-18081156,18081731-18082730 28 8.4
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 28 8.4
>12_01_0489 +
3872495-3872538,3872663-3872741,3872835-3872914,
3873888-3874007,3874090-3874159,3874238-3874311,
3874393-3874513,3874600-3874662,3874748-3874807,
3875156-3875281,3875358-3875441,3875912-3876010
Length = 339
Score = 94.3 bits (224), Expect = 8e-20
Identities = 44/81 (54%), Positives = 52/81 (64%)
Frame = +2
Query: 8 RADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRC 187
R G PCP YK++ILDEADSMT AQ AL F ICNY+SRII P+ SRC
Sbjct: 106 RKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 165
Query: 188 SKFRFKPLARENVIKRLREIC 250
+KFRFKPL+ E + R+ IC
Sbjct: 166 AKFRFKPLSEEVMSNRILHIC 186
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Frame = +1
Query: 313 GDLRRALTALQCCQRLYG-RITADGLIEVTGLVPEKLVNEYLSIKNYSELE---EFVQNF 480
GDLRRA+T LQ RL+G I++ LI V+G +PE +V L+ E + + V N
Sbjct: 207 GDLRRAITYLQSAARLFGSSISSTDLISVSGAIPEDVVKSLLASCKSGEFDVANKEVNNI 266
Query: 481 LMRAYSASQL 510
+ Y SQL
Sbjct: 267 IADGYPVSQL 276
>04_04_0840 +
28570642-28570809,28570919-28571025,28571137-28571238,
28571786-28571981,28572691-28572819,28572869-28572895,
28572896-28573090,28573182-28573292
Length = 344
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/75 (44%), Positives = 44/75 (58%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+VILDEADSMT+ AQ AL F L CN S+II PI SRC+ RF L+
Sbjct: 116 HKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLS 175
Query: 215 RENVIKRLREICEAK 259
+ ++ RL + A+
Sbjct: 176 DQEILGRLMIVVAAE 190
>02_05_0922 -
32742863-32742958,32743081-32743136,32743253-32743382,
32743768-32743849,32744038-32744227,32744290-32744369,
32744769-32744985,32745740-32745923
Length = 344
Score = 60.5 bits (140), Expect = 1e-09
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 10/86 (11%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXX----------FCLICNYVSRIIPPITS 181
S K+V+LDEAD+MT AQ AL F LICN+V++IIP + S
Sbjct: 138 SVKMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKHTRSTRFALICNHVNKIIPALQS 197
Query: 182 RCSKFRFKPLARENVIKRLREICEAK 259
RC++FRF PL +V +RL+ I +++
Sbjct: 198 RCTRFRFAPLDGTHVRERLKHIIQSE 223
>03_06_0267 -
32751431-32751489,32751600-32751645,32751886-32751960,
32752045-32752114,32752288-32752386,32752505-32752641,
32753040-32753221,32753314-32753482,32753824-32753856,
32753958-32754068,32754184-32754295,32755592-32755727,
32756264-32756291
Length = 418
Score = 36.3 bits (80), Expect = 0.024
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +2
Query: 14 DGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSK 193
D + ++K+++L+E D ++ AQ +L L CN S++ + SRC
Sbjct: 188 DAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLN 247
Query: 194 FRFKPLARENVIKRLREI 247
R + + +++ L I
Sbjct: 248 VRVNAPSEDQIVQVLEFI 265
>12_01_0671 -
5702051-5702159,5702493-5703216,5703910-5704476,
5704654-5704873,5705303-5707207
Length = 1174
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YKL ++DE +++ +A F I + + SRC K+ F +
Sbjct: 516 YKLFVVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNLPRAVISRCQKYVFSKIK 575
Query: 215 RENVIKRLREIC 250
+++ RLR IC
Sbjct: 576 DIDIVCRLRRIC 587
>03_06_0110 -
31727376-31727381,31727554-31727664,31728071-31728133,
31729202-31729331,31729532-31729701,31729800-31729859,
31729941-31730018,31730108-31730197,31730275-31731118,
31731220-31731281,31731362-31731423,31731511-31731700
Length = 621
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 649 PKSVSCMNSDPPSSRRCRQTAVFSLMA 569
P C +S+P SS++C QTAV S+ A
Sbjct: 247 PSRYLCQSSNPKSSKKCDQTAVKSVKA 273
>12_01_1073 +
11135853-11137388,11137627-11137846,11137990-11138178,
11138257-11138457,11138547-11139246,11163479-11164106
Length = 1157
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/72 (20%), Positives = 31/72 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K+ I+DE + A +A+ + +I + + + + C KF F +
Sbjct: 393 FKVFIVDECHLLPEDAWSAILKSLDEPYRHAVYIMITSDIDSLPRTSITHCQKFHFPKIK 452
Query: 215 RENVIKRLREIC 250
+++ RL IC
Sbjct: 453 VADIVYRLERIC 464
>11_02_0042 -
7672565-7672729,7672902-7672977,7673409-7674132,
7674684-7674708,7675041-7675486,7676643-7676862,
7677609-7678459,7678697-7679555
Length = 1121
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ ++DE +++ +A F I + + SRC K+ F +
Sbjct: 451 YKVFVVDECHMVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVISRCQKYMFSKIK 510
Query: 215 RENVIKRLREI 247
+++ RLR+I
Sbjct: 511 DIDIVCRLRKI 521
>09_06_0222 - 21655236-21655841
Length = 201
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -2
Query: 613 SSRRCRQTAVFSLMAHFCLFVRCPAATTVALNCSRAAMPNTLASGNSEQIPP 458
S R T F ++A F+ C + CSR P++ A E +PP
Sbjct: 21 SGGRGVHTDTFLILAAVLCFLLCVVGLALVARCSRLCNPSSFAVEAEEAMPP 72
>08_01_1033 -
10461135-10461377,10462124-10462354,10465853-10466336,
10466566-10466822
Length = 404
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 562 CLFVRCPAATTVALNCSRAAMPNTLASGNSEQI 464
CL RC + LN + M +T+A+GN I
Sbjct: 304 CLLARCNSLRYFQLNMTSPIMDSTIAAGNQASI 336
>05_01_0319 +
2503963-2504176,2504316-2504376,2504691-2504769,
2504861-2504940,2505046-2505140,2505748-2505847,
2506647-2506716,2507657-2507758,2507972-2508053,
2508257-2508304,2508841-2509009,2509089-2509314,
2509961-2510131,2510200-2510438,2510600-2510684,
2510778-2510876,2510954-2511153,2511232-2511307,
2511463-2511675,2511763-2511815,2511999-2512151,
2512474-2512606
Length = 915
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 443 LMLRYSLTNFSGTSPVTSISPSAVILPYNLWQHCSAVSALRRSPSQV 303
L+ +S TN+ G SP+TS A + P L + C L+ P V
Sbjct: 767 LITLFSATNYCGMSPLTSFVTYASMQPSFLLRPCVHQLILQSLPQNV 813
>04_03_0619 - 18079520-18079693,18081071-18081156,18081731-18082730
Length = 419
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -3
Query: 528 WHSTVPELRCRIRSHQEILNKFLQF*IVLDA*VLINQFFRNKSSHLN*SISSDPAVQPL 352
W EL R + E + K L + D +L+ +F +NK+ + I +DP+++ L
Sbjct: 90 WAEFTDELLILSRVNHENIVKLLGCCLQFDVPILVYEFVQNKTLYNLIHIQNDPSIRTL 148
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 253 SENVDVGEGEILNQAVDTCEGDLRRAL-TALQCCQRLYGRITADGLIEV 396
S+N+++G+ ++LN D C + L A+ +++ T DG+ EV
Sbjct: 683 SQNINIGKLKVLNSPWDVCYDPSKETLYIAMAGQHQIWKHNTLDGVTEV 731
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,762,899
Number of Sequences: 37544
Number of extensions: 375485
Number of successful extensions: 981
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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