Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20665
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12)                   79   3e-15
SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_44747| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   6.5  
SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_58124| Best HMM Match : Ribonuclease_3 (HMM E-Value=7e-28)          28   8.5  

>SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12)
          Length = 230

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 36/75 (48%), Positives = 51/75 (68%)
 Frame = +2

Query: 35  YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
           +KLVILDEAD+MT  AQ AL            FCLICNY+++IIP + SRC++FRF PL+
Sbjct: 76  FKLVILDEADAMTQDAQNALRRVMEKFTENTRFCLICNYLTKIIPALQSRCTRFRFGPLS 135

Query: 215 RENVIKRLREICEAK 259
            + ++ RL  + E++
Sbjct: 136 VDQMLPRLEHVIESE 150


>SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 24/73 (32%), Positives = 36/73 (49%)
 Frame = +2

Query: 35  YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
           +K+V+L E D +T  AQ AL              L CN  S++IP I SRC   R    +
Sbjct: 46  FKVVVLTEVDRLTKDAQHALRRTMEKYTSTCRLILCCNSTSKVIPAIRSRCLGVRIPAPS 105

Query: 215 RENVIKRLREICE 253
            E + + L+ +C+
Sbjct: 106 VEEICQILQFVCK 118


>SB_44747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -1

Query: 416 FSGTSPVTSISPSAVILPYNLWQHCSAVSALRRSPSQVSTAWFRISPSPTSTFSLHISHV 237
           F   SP+ SI    V+L   LW     + + R +   V T W   S SPT    LH+  V
Sbjct: 136 FLARSPMLSIESERVLLARKLWLPRDNLISSRITTLTV-TGWGHRSGSPTPYSILHVDKV 194

Query: 236 TV 231
           ++
Sbjct: 195 SL 196


>SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 893

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
 Frame = +1

Query: 265 DVGEGE-ILNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPEKLVNE---- 429
           D G G+ +L+ A D C G     LT    C+ + GRIT +   +V  L   K+V      
Sbjct: 47  DDGRGDNVLSDADDDCCGVDDDVLTVECFCRIMMGRITHNNRNQVFSLSRSKIVKVCFKR 106

Query: 430 ---YLSIK-NYSELEEFVQNFLMRAY-SASQLW 513
              ++ I+ +++E  + +  F M  Y S   LW
Sbjct: 107 KRFFIQIRPDWNEWTDNIIGFQMLTYRSCKNLW 139


>SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 885

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
 Frame = -2

Query: 685 HQGLLLAIIRVHPKSVSCMNSDPPSSRRCRQTAVFSLMAHFCLFVR------CPAATTVA 524
           H G++   +R+  ++ S  N+DP   +  R+  + +++AH+   +R      C    T A
Sbjct: 435 HMGVVREGVRICSRACSSANADPSVVKTSRK-VILNILAHYDSEIRLEGYRSCLGVVTEA 493

Query: 523 LNCSRAAMP-NTLASG 479
           L  S    P +T+  G
Sbjct: 494 LKVSHVTYPVSTVCQG 509


>SB_58124| Best HMM Match : Ribonuclease_3 (HMM E-Value=7e-28)
          Length = 602

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 559 LFVRCPAATTVALNCSRAAMPNTLASGNSEQIPPILN 449
           L+ R P  T +   CS  A+P +L S N++ +P +L+
Sbjct: 188 LYARQPTTTAITKLCSHDAIPASLLS-NAQILPSVLH 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,452,770
Number of Sequences: 59808
Number of extensions: 432760
Number of successful extensions: 1327
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)