Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20665
(707 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069598-1|AAL39743.1| 353|Drosophila melanogaster LD35209p pro... 113 2e-25
AE014298-2614|AAF48768.2| 353|Drosophila melanogaster CG8142-PA... 113 2e-25
AY119188-1|AAM51048.1| 332|Drosophila melanogaster SD11293p pro... 87 3e-17
AF247499-1|AAF63387.1| 332|Drosophila melanogaster replication ... 87 3e-17
AE014134-1878|AAF52944.2| 332|Drosophila melanogaster CG5313-PA... 87 3e-17
U15967-1|AAB60241.1| 331|Drosophila melanogaster rfc40 protein. 62 5e-10
AY094829-1|AAM11182.1| 331|Drosophila melanogaster LD40483p pro... 62 5e-10
AE014296-772|AAF47843.1| 331|Drosophila melanogaster CG14999-PA... 62 5e-10
AF160912-1|AAD46852.2| 395|Drosophila melanogaster LD06837p pro... 40 0.003
AE014134-2037|AAF53076.2| 356|Drosophila melanogaster CG6258-PA... 40 0.003
AE014134-3259|AAG22448.2| 300|Drosophila melanogaster CG18810-P... 29 6.2
>AY069598-1|AAL39743.1| 353|Drosophila melanogaster LD35209p
protein.
Length = 353
Score = 113 bits (272), Expect = 2e-25
Identities = 53/82 (64%), Positives = 60/82 (73%)
Frame = +2
Query: 8 RADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRC 187
R DG+PCP +K++ILDEADSMT AAQ+AL FCLICNYVSRII PITSRC
Sbjct: 126 RPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRC 185
Query: 188 SKFRFKPLARENVIKRLREICE 253
SKFRFK L + VI RL+ ICE
Sbjct: 186 SKFRFKALGEDKVIDRLKYICE 207
Score = 58.0 bits (134), Expect = 1e-08
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Frame = +1
Query: 274 EGEILNQAVDTCEGDLRRALTALQCCQRLYGR---ITADGLIEVTGLVPEKLVNEYLSI- 441
E + V GDLRRA+T LQ C RL G I L E++G++PE + +YL +
Sbjct: 214 EDDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFEMSGVIPEYYLEDYLEVC 273
Query: 442 --KNYSELEEFVQNFLMRAYSASQL 510
NY LE+FV+ AYS Q+
Sbjct: 274 RSGNYERLEQFVREIGFSAYSVGQM 298
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +3
Query: 510 LEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDLGCTLIMA 668
+EQ +V L + QK I +K C RL DGGSE++Q+ DLGC +I+A
Sbjct: 299 MEQFVEFIVHHPGLNDPQKATICDKLGECCFRLQDGGSEYLQIMDLGCCIILA 351
>AE014298-2614|AAF48768.2| 353|Drosophila melanogaster CG8142-PA
protein.
Length = 353
Score = 113 bits (272), Expect = 2e-25
Identities = 53/82 (64%), Positives = 60/82 (73%)
Frame = +2
Query: 8 RADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRC 187
R DG+PCP +K++ILDEADSMT AAQ+AL FCLICNYVSRII PITSRC
Sbjct: 126 RPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRC 185
Query: 188 SKFRFKPLARENVIKRLREICE 253
SKFRFK L + VI RL+ ICE
Sbjct: 186 SKFRFKALGEDKVIDRLKYICE 207
Score = 58.0 bits (134), Expect = 1e-08
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Frame = +1
Query: 274 EGEILNQAVDTCEGDLRRALTALQCCQRLYGR---ITADGLIEVTGLVPEKLVNEYLSI- 441
E + V GDLRRA+T LQ C RL G I L E++G++PE + +YL +
Sbjct: 214 EDDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFEMSGVIPEYYLEDYLEVC 273
Query: 442 --KNYSELEEFVQNFLMRAYSASQL 510
NY LE+FV+ AYS Q+
Sbjct: 274 RSGNYERLEQFVREIGFSAYSVGQM 298
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +3
Query: 510 LEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDLGCTLIMA 668
+EQ +V L + QK I +K C RL DGGSE++Q+ DLGC +I+A
Sbjct: 299 MEQFVEFIVHHPGLNDPQKATICDKLGECCFRLQDGGSEYLQIMDLGCCIILA 351
>AY119188-1|AAM51048.1| 332|Drosophila melanogaster SD11293p
protein.
Length = 332
Score = 86.6 bits (205), Expect = 3e-17
Identities = 38/78 (48%), Positives = 55/78 (70%)
Frame = +2
Query: 26 CPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFK 205
C ++KL+ILDEAD+MT AQ AL FC+ICNY+S+IIP + SRC++FRF
Sbjct: 107 CDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFA 166
Query: 206 PLARENVIKRLREICEAK 259
PL+++ ++ RL +I EA+
Sbjct: 167 PLSQDQMMPRLEKIIEAE 184
>AF247499-1|AAF63387.1| 332|Drosophila melanogaster replication
factor C subunit 3 protein.
Length = 332
Score = 86.6 bits (205), Expect = 3e-17
Identities = 38/78 (48%), Positives = 55/78 (70%)
Frame = +2
Query: 26 CPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFK 205
C ++KL+ILDEAD+MT AQ AL FC+ICNY+S+IIP + SRC++FRF
Sbjct: 107 CDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFA 166
Query: 206 PLARENVIKRLREICEAK 259
PL+++ ++ RL +I EA+
Sbjct: 167 PLSQDQMMPRLEKIIEAE 184
>AE014134-1878|AAF52944.2| 332|Drosophila melanogaster CG5313-PA
protein.
Length = 332
Score = 86.6 bits (205), Expect = 3e-17
Identities = 38/78 (48%), Positives = 55/78 (70%)
Frame = +2
Query: 26 CPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFK 205
C ++KL+ILDEAD+MT AQ AL FC+ICNY+S+IIP + SRC++FRF
Sbjct: 107 CDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFA 166
Query: 206 PLARENVIKRLREICEAK 259
PL+++ ++ RL +I EA+
Sbjct: 167 PLSQDQMMPRLEKIIEAE 184
>U15967-1|AAB60241.1| 331|Drosophila melanogaster rfc40 protein.
Length = 331
Score = 62.5 bits (145), Expect = 5e-10
Identities = 33/77 (42%), Positives = 42/77 (54%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
P +K+VILDEADSMT AQ AL F L CN +II PI SRC+ RF
Sbjct: 111 PRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRF 170
Query: 203 KPLARENVIKRLREICE 253
L+ V+ +L E+ +
Sbjct: 171 TKLSDAQVLAKLIEVAK 187
Score = 31.9 bits (69), Expect = 0.88
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 286 LNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPEKLVNEYL 435
L V T +GD+R+ L LQ + +G ITA+ + +V KL+ E +
Sbjct: 198 LEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMI 247
>AY094829-1|AAM11182.1| 331|Drosophila melanogaster LD40483p
protein.
Length = 331
Score = 62.5 bits (145), Expect = 5e-10
Identities = 33/77 (42%), Positives = 42/77 (54%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
P +K+VILDEADSMT AQ AL F L CN +II PI SRC+ RF
Sbjct: 111 PRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRF 170
Query: 203 KPLARENVIKRLREICE 253
L+ V+ +L E+ +
Sbjct: 171 TKLSDAQVLAKLIEVAK 187
Score = 31.9 bits (69), Expect = 0.88
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 286 LNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPEKLVNEYL 435
L V T +GD+R+ L LQ + +G ITA+ + +V KL+ E +
Sbjct: 198 LEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMI 247
>AE014296-772|AAF47843.1| 331|Drosophila melanogaster CG14999-PA
protein.
Length = 331
Score = 62.5 bits (145), Expect = 5e-10
Identities = 33/77 (42%), Positives = 42/77 (54%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
P +K+VILDEADSMT AQ AL F L CN +II PI SRC+ RF
Sbjct: 111 PRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRF 170
Query: 203 KPLARENVIKRLREICE 253
L+ V+ +L E+ +
Sbjct: 171 TKLSDAQVLAKLIEVAK 187
Score = 31.9 bits (69), Expect = 0.88
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 286 LNQAVDTCEGDLRRALTALQCCQRLYGRITADGLIEVTGLVPEKLVNEYL 435
L V T +GD+R+ L LQ + +G ITA+ + +V KL+ E +
Sbjct: 198 LEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMI 247
>AF160912-1|AAD46852.2| 395|Drosophila melanogaster LD06837p
protein.
Length = 395
Score = 40.3 bits (90), Expect = 0.003
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K++++ E D +T AQ AL + N SRIIP I SRC R
Sbjct: 168 FKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPN 227
Query: 215 RENVIKRLREICE 253
++ L+ C+
Sbjct: 228 ETEIVSILQNTCK 240
>AE014134-2037|AAF53076.2| 356|Drosophila melanogaster CG6258-PA
protein.
Length = 356
Score = 40.3 bits (90), Expect = 0.003
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K++++ E D +T AQ AL + N SRIIP I SRC R
Sbjct: 129 FKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPN 188
Query: 215 RENVIKRLREICE 253
++ L+ C+
Sbjct: 189 ETEIVSILQNTCK 201
>AE014134-3259|AAG22448.2| 300|Drosophila melanogaster CG18810-PA
protein.
Length = 300
Score = 29.1 bits (62), Expect = 6.2
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -2
Query: 619 PPSSRRCRQTAVFSLMA-HFCLFVRC 545
PP SR CR+ V LM H C F C
Sbjct: 107 PPRSRHCRKCGVCVLMRDHHCFFTGC 132
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,287,768
Number of Sequences: 53049
Number of extensions: 641328
Number of successful extensions: 1652
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -