Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20665
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna replic... 87 1e-17
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 77 9e-15
AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna repl... 63 2e-10
Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical p... 51 7e-07
Z82265-6|CAB05170.2| 537|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z82068-1|CAB04897.1| 149|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF106584-6|AAC78220.1| 424|Caenorhabditis elegans Hypothetical ... 28 5.7
Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z22175-2|CAA80131.2| 520|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z11115-20|CAA77460.2| 520|Caenorhabditis elegans Hypothetical p... 27 9.9
AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical... 27 9.9
AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical... 27 9.9
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 27 9.9
>U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 4 protein.
Length = 334
Score = 87.0 bits (206), Expect = 1e-17
Identities = 40/74 (54%), Positives = 51/74 (68%)
Frame = +2
Query: 38 KLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLAR 217
K++ILDE D+MT AQAA+ F LICNYVSR+IPP+ SRC+KFRFK L
Sbjct: 120 KIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPA 179
Query: 218 ENVIKRLREICEAK 259
E ++RLR IC+A+
Sbjct: 180 EIQVQRLRTICDAE 193
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 77.4 bits (182), Expect = 9e-15
Identities = 36/75 (48%), Positives = 49/75 (65%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+KLVILDEAD+MT AQ AL FC+ICNY++ I+P I SRC++FRF PL
Sbjct: 137 FKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLD 196
Query: 215 RENVIKRLREICEAK 259
++ ++ RL I E +
Sbjct: 197 QKLIVPRLEYIVETE 211
>AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 2 protein.
Length = 334
Score = 62.9 bits (146), Expect = 2e-10
Identities = 30/75 (40%), Positives = 44/75 (58%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
+K++ILDEADSMT AQ AL F L CN +II PI SRC+ R+ L+
Sbjct: 109 HKIIILDEADSMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLS 168
Query: 215 RENVIKRLREICEAK 259
++ R++E+ +A+
Sbjct: 169 PVQLLTRVKEVAKAE 183
>Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical
protein C39E9.13 protein.
Length = 354
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/80 (36%), Positives = 42/80 (52%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
S+K+V+L EADS+T AQ L L C +SRII P+ SRC
Sbjct: 130 SFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVPAP 189
Query: 212 ARENVIKRLREICEAKTWML 271
E+V K LR++ E ++++L
Sbjct: 190 TDEDVTKVLRKVIERESFLL 209
>Z82265-6|CAB05170.2| 537|Caenorhabditis elegans Hypothetical
protein F02H6.1 protein.
Length = 537
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 274 EGEILNQAVDTCEGDLRRALTALQCCQRLYGRITADGL-IEVTGLVPEKLVNEYLSIKNY 450
EGEI++Q D+ +GD+RR L + G I +G IE V ++L +EY +
Sbjct: 418 EGEIMDQLNDSVKGDMRR-LNPM-APGNASGNIQQEGAGIETDVDVDDELEDEYSGSDSS 475
Query: 451 SELEE 465
++EE
Sbjct: 476 QDVEE 480
>Z82068-1|CAB04897.1| 149|Caenorhabditis elegans Hypothetical
protein W04A4.3 protein.
Length = 149
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 262 VDVGEGEILNQAVDTCE-GDLRRALTALQCCQRLYGRITAD 381
+ +G+ + AV TCE G L L LQCC + Y R D
Sbjct: 78 LSIGQKKGNGTAVATCENGWLECQLNKLQCCTKKYSRNVTD 118
>AF106584-6|AAC78220.1| 424|Caenorhabditis elegans Hypothetical
protein F54A5.1 protein.
Length = 424
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -1
Query: 422 TNFSGTSPVTSISPSAVILPYNLWQHCSAVSALRRSPSQVS---TAWFRISPSPTSTFSL 252
T+ T+P T+ISPS + + + + + +SA + S +S T +SPS F++
Sbjct: 327 TSSRNTTPETAISPSPAVSTFEVSRPSAIISATSSTTSPISIPATIIPSVSPSALELFAM 386
>Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 72 LQQLKRHFDALWNARLVLHGSVSSATMCQESYRQ 173
+Q+LK D L A+L +H VSS + Y Q
Sbjct: 310 IQELKDRIDKLTQAQLAIHQLVSSQPFSGDPYNQ 343
>Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 72 LQQLKRHFDALWNARLVLHGSVSSATMCQESYRQ 173
+Q+LK D L A+L +H VSS + Y Q
Sbjct: 308 IQELKDRIDKLTQAQLAIHQLVSSQPFSGDPYNQ 341
>Z22175-2|CAA80131.2| 520|Caenorhabditis elegans Hypothetical
protein ZK637.1 protein.
Length = 520
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 283 ILNQAVDTCEGDLRRALTALQCCQRL----YGRITADGLIEVTGLVPEKLVNEYLSIKNY 450
+L Q+ D C G L T ++ CQ L Y + + L E GL+ L+ E+ K
Sbjct: 342 VLFQSHDECHGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKT 401
Query: 451 SELE 462
LE
Sbjct: 402 MALE 405
>Z11115-20|CAA77460.2| 520|Caenorhabditis elegans Hypothetical
protein ZK637.1 protein.
Length = 520
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 283 ILNQAVDTCEGDLRRALTALQCCQRL----YGRITADGLIEVTGLVPEKLVNEYLSIKNY 450
+L Q+ D C G L T ++ CQ L Y + + L E GL+ L+ E+ K
Sbjct: 342 VLFQSHDECHGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKT 401
Query: 451 SELE 462
LE
Sbjct: 402 MALE 405
>AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 72 LQQLKRHFDALWNARLVLHGSVSSATMCQESYRQ 173
+Q+LK D L A+L +H VSS + Y Q
Sbjct: 310 IQELKDRIDKLTQAQLAIHQLVSSQPFSGDPYNQ 343
>AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 72 LQQLKRHFDALWNARLVLHGSVSSATMCQESYRQ 173
+Q+LK D L A+L +H VSS + Y Q
Sbjct: 308 IQELKDRIDKLTQAQLAIHQLVSSQPFSGDPYNQ 341
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 136 TEPCSTSLAFHSASKCRLSCCSHRVCFIQNDQFV*GTWST 17
TEPC T + + RLSCC ++ +Q + G +T
Sbjct: 1050 TEPCGTGVCYFP----RLSCCPGYTATVEGNQHICGPLTT 1085
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,781,002
Number of Sequences: 27780
Number of extensions: 316986
Number of successful extensions: 848
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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