Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20665
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 95 4e-20
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 95 4e-20
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 69 3e-12
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 62 3e-10
At5g27740.1 68418.m03327 expressed protein 42 3e-04
At5g45720.1 68418.m05621 hypothetical protein 34 0.080
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ... 32 0.43
At2g46850.1 68415.m05846 expressed protein 29 2.3
At4g18820.1 68417.m02778 expressed protein 29 4.0
At3g60390.1 68416.m06754 homeobox-leucine zipper protein 3 (HAT3... 29 4.0
At4g36920.1 68417.m05233 floral homeotic protein APETALA2 (AP2) ... 28 7.0
At2g16120.1 68415.m01848 mannitol transporter, putative similar ... 27 9.2
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 95.1 bits (226), Expect = 4e-20
Identities = 44/81 (54%), Positives = 53/81 (65%)
Frame = +2
Query: 8 RADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRC 187
R G PCPS+K++ILDEADSMT AQ AL F ICNY+SRII P+ SRC
Sbjct: 95 RQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 154
Query: 188 SKFRFKPLARENVIKRLREIC 250
+KFRFKPL+ E + R+ IC
Sbjct: 155 AKFRFKPLSEEVMSNRILHIC 175
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Frame = +1
Query: 274 EGEILNQAVDTCEGDLRRALTALQCCQRLYG-RITADGLIEVTGLVPEKLVNE-YLSIK- 444
+GE L+ +GDLRRA+T LQ RL+G IT+ L+ V+G+VP ++VN+ + + K
Sbjct: 183 DGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKS 242
Query: 445 -NYSELEEFVQNFLMRAYSASQLWN 516
++ + V N + Y ASQ+ N
Sbjct: 243 GDFDIANKEVDNIVAEGYPASQIIN 267
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 95.1 bits (226), Expect = 4e-20
Identities = 44/81 (54%), Positives = 53/81 (65%)
Frame = +2
Query: 8 RADGRPCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRC 187
R G PCPS+K++ILDEADSMT AQ AL F ICNY+SRII P+ SRC
Sbjct: 107 RQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 166
Query: 188 SKFRFKPLARENVIKRLREIC 250
+KFRFKPL+ E + R+ IC
Sbjct: 167 AKFRFKPLSEEVMSNRILHIC 187
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Frame = +1
Query: 274 EGEILNQAVDTCEGDLRRALTALQCCQRLYG-RITADGLIEVTGLVPEKLVNE-YLSIK- 444
+GE L+ +GDLRRA+T LQ RL+G IT+ L+ V+G+VP ++VN+ + + K
Sbjct: 195 DGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKS 254
Query: 445 -NYSELEEFVQNFLMRAYSASQLWN 516
++ + V N + Y ASQ+ N
Sbjct: 255 GDFDIANKEVDNIVAEGYPASQIIN 279
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 68.9 bits (161), Expect = 3e-12
Identities = 35/76 (46%), Positives = 49/76 (64%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPL 211
S KLV+LDEAD+MT AQ AL F LI N+V++IIP + SRC++FRF PL
Sbjct: 138 SVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPL 197
Query: 212 ARENVIKRLREICEAK 259
++ +RL+ + EA+
Sbjct: 198 DGVHMSQRLKHVIEAE 213
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/79 (41%), Positives = 45/79 (56%)
Frame = +2
Query: 23 PCPSYKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRF 202
P +K+VILDEADSMT+ AQ AL F L CN ++II PI SRC+ RF
Sbjct: 110 PPGRHKVVILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRF 169
Query: 203 KPLARENVIKRLREICEAK 259
L+ + ++ RL + A+
Sbjct: 170 SRLSDQQILGRLLVVVAAE 188
>At5g27740.1 68418.m03327 expressed protein
Length = 354
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+++L+E D ++ AQ +L L CN S++ I SRC R +
Sbjct: 131 YKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCLNVRINAPS 190
Query: 215 RENVIKRLREICEAKTWML 271
+E ++K L + + ++ L
Sbjct: 191 QEEIVKVLEFVAKKESLQL 209
>At5g45720.1 68418.m05621 hypothetical protein
Length = 900
Score = 34.3 bits (75), Expect = 0.080
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +2
Query: 41 LVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLARE 220
++I D+ D+M+T L F L+C+ + + I SRC KF F L
Sbjct: 458 VLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDV 517
Query: 221 NVIKRLREI 247
++I L+ I
Sbjct: 518 DIIDSLQLI 526
>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1116
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +2
Query: 35 YKLVILDEADSMTTAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLA 214
YK+ ++DE + + +L F I + + I SRC K+ F +
Sbjct: 541 YKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKVR 600
Query: 215 RENVIKRLREI 247
+++ RLR+I
Sbjct: 601 DGDIVVRLRKI 611
>At2g46850.1 68415.m05846 expressed protein
Length = 633
Score = 29.5 bits (63), Expect = 2.3
Identities = 27/75 (36%), Positives = 38/75 (50%)
Frame = -1
Query: 464 SSNSE*FLMLRYSLTNFSGTSPVTSISPSAVILPYNLWQHCSAVSALRRSPSQVSTAWFR 285
SS+S FL+L LT + TS ++ P A+ P +VS + S S A FR
Sbjct: 8 SSSSALFLLLLLLLTLQTLTS-ISLSQPQALRSPEKCGNF--SVSFPFQLSSSSSAAAFR 64
Query: 284 ISPSPTSTFSLHISH 240
+S +ST LHI+H
Sbjct: 65 LSCENSSTLFLHINH 79
>At4g18820.1 68417.m02778 expressed protein
Length = 1111
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 32 SYKLVILDEADSMTTAAQAALXXXXXXXXXXXX-FCLICNYVSRIIPPITSRCSKFRFKP 208
S ++ I D+ D++++ AL F L+C+ + + I SRC KF F
Sbjct: 545 SPRVFIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPK 604
Query: 209 LARENVIKRLREI 247
L +++ L+ I
Sbjct: 605 LKDADIVYSLQWI 617
>At3g60390.1 68416.m06754 homeobox-leucine zipper protein 3 (HAT3) /
HD-ZIP protein 3 identical to Homeobox-leucine zipper
protein HAT3 (SP:P46602) [Arabidopsis thaliana]
Length = 315
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 577 LMAHFCLFVRCPAATTVALNCSRAAMPNTLASGNSEQIPPILNSS*CLG 431
L H + ++ P T+ +C R A+ S +S PP++NSS +G
Sbjct: 252 LSPHLYMHMKPPTTLTMCPSCERVAV----TSSSSSVAPPVMNSSSPMG 296
>At4g36920.1 68417.m05233 floral homeotic protein APETALA2 (AP2)
Identical to (SP:P47927) Floral homeotic protein
APETALA2. [Mouse-ear cress] {Arabidopsis thaliana}
Length = 432
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 459 GGICSEFPDASVFGIAALEQLSATVVAAGHLTN 557
GG+ S FP A FG+ + AT +AG TN
Sbjct: 74 GGVASGFPRAHWFGVKFCQSDLATGSSAGKATN 106
>At2g16120.1 68415.m01848 mannitol transporter, putative similar to
mannitol transporter [Apium graveolens var. dulce]
GI:12004316; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 511
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 618 GSEFMQLTDLGCTLIMANNNP*CYLIWSPG 707
G F+ LT LG +L + N NP L W+ G
Sbjct: 358 GGMFLSLTALGTSLTVINRNPGQTLKWAIG 387
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,006
Number of Sequences: 28952
Number of extensions: 293749
Number of successful extensions: 765
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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