Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20664
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                111   2e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   5e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           50   6e-07
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              42   2e-04
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     37   0.007
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.16 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.5  
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)                      28   2.6  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  27   5.9  
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   27   7.8  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              27   7.8  
SB_13780| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  111 bits (267), Expect = 2e-25
 Identities = 50/53 (94%), Positives = 51/53 (96%)
 Frame = +2

Query: 251 G*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 409
           G GSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNM
Sbjct: 2   GKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNM 54


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 5e-21
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 251
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 50.4 bits (115), Expect = 6e-07
 Identities = 22/67 (32%), Positives = 39/67 (58%)
 Frame = +2

Query: 209 QTYHREVREGGPGNG*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGH 388
           + Y RE +E        ++  +W LD  + ER++G T+++    F+T   + T++DAPGH
Sbjct: 177 EKYEREAKEKNRE----TWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGH 232

Query: 389 RDFIKNM 409
           + F+ NM
Sbjct: 233 KSFVPNM 239



 Score = 33.1 bits (72), Expect = 0.090
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +3

Query: 189 YKCGGIDKRTIEKFEKEAQEMGKD 260
           Y  G +DKRT+EK+E+EA+E  ++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRE 189


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +2

Query: 320 IDIALWKFETSKYYVTIIDAPGHRDFIKNM 409
           +D+ L +F+T    +T++DAPGH+DFI NM
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNM 30


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +2

Query: 284 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKN 406
           D ++ ER+RGI++  ++  F      + I+D PGH+DF ++
Sbjct: 55  DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAED 95


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 200
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 120 THINIVVIGHVDSGKSTTTGHLIY 191
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 278  VLDKLKAERERGITI 322
            VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 129  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 227
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
          Length = 228

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 123 HINIVVIGHVDSGKSTTTGHLIY---KCGGIDKRTIEKFEKEAQEMGKDPSNML 275
           H+   VIGH+    ST  GHLI     C  + + + + F+++   + K  +N+L
Sbjct: 169 HLTSTVIGHLQHLTSTVIGHLIVIDGDCHSLTEISNQGFDRKTNLLCKLGTNIL 222


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 126 INIVVIGHVDSGKSTTTGHLIY 191
           + + V+G+VD+GKST  G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 279  TQAYLKDPYPFPGPPSRTSRWYVCQYHHIC 190
            T  Y   P   PG  S   +W +C+Y+  C
Sbjct: 1229 TSLYCSCPTCLPGSGSLEMKWSICKYNGSC 1258


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 102 KMGKEKTHINIVVIGHVDSGKST 170
           K+ +   + NI V+GHVDSGK++
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTS 50



 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 13/55 (23%)
 Frame = +2

Query: 284 DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNM 409
           DK    +ERGIT+D+    F+ +                +T++D PGH   IK +
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTI 119


>SB_13780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -2

Query: 351 LVSNFQRAISIVIPRSRSAFSLSNTQAYLKDPYPFPGPPSRTSRWYVCQYHHICRSSDQ 175
           +++ +Q    IVI RS  AF    +Q + +   PF           V +Y +I  S+DQ
Sbjct: 205 VLTEYQEGYGIVISRSVRAFQSKFSQVFWRKCSPFKWVRPLVREKGVKKYFYIWYSTDQ 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,163,699
Number of Sequences: 59808
Number of extensions: 220305
Number of successful extensions: 547
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)