Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20664
(409 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 112 8e-26
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 112 8e-26
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 112 8e-26
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 112 8e-26
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 109 6e-25
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 75 2e-14
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 75 2e-14
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 69 2e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 46 1e-05
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 46 1e-05
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 46 1e-05
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 45 2e-05
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 45 2e-05
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 42 1e-04
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 39 0.001
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 35 0.020
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.10
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.10
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 32 0.14
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 1.7
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 29 1.7
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 29 1.7
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 28 3.0
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 28 3.0
Z72511-6|CAA96659.2| 391|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z92782-9|CAE17814.1| 329|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z70751-1|CAA94751.1| 544|Caenorhabditis elegans Hypothetical pr... 27 6.9
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 26 9.1
U00052-1|AAK95880.2| 308|Caenorhabditis elegans Hypothetical pr... 26 9.1
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 26 9.1
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 112 bits (270), Expect = 8e-26
Identities = 50/53 (94%), Positives = 52/53 (98%)
Frame = +2
Query: 251 G*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 409
G GSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNM
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNM 102
Score = 109 bits (263), Expect = 6e-25
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +3
Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 257
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 112 bits (270), Expect = 8e-26
Identities = 50/53 (94%), Positives = 52/53 (98%)
Frame = +2
Query: 251 G*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 409
G GSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNM
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNM 102
Score = 109 bits (263), Expect = 6e-25
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +3
Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 257
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 112 bits (270), Expect = 8e-26
Identities = 50/53 (94%), Positives = 52/53 (98%)
Frame = +2
Query: 251 G*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 409
G GSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNM
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNM 102
Score = 109 bits (263), Expect = 6e-25
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +3
Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 257
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 112 bits (270), Expect = 8e-26
Identities = 50/53 (94%), Positives = 52/53 (98%)
Frame = +2
Query: 251 G*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 409
G GSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNM
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNM 102
Score = 109 bits (263), Expect = 6e-25
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +3
Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 257
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 109 bits (263), Expect = 6e-25
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +3
Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 257
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 33.9 bits (74), Expect = 0.045
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2
Query: 251 G*GSFKYAWVLDKLKAER 304
G GSFKYAWVLDKLK +
Sbjct: 50 GKGSFKYAWVLDKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 74.9 bits (176), Expect = 2e-14
Identities = 32/54 (59%), Positives = 40/54 (74%)
Frame = +2
Query: 248 NG*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 409
NG SF YAWVLD+ + ERERG+T+DI FETS + ++DAPGH+DFI NM
Sbjct: 212 NGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNM 265
Score = 58.8 bits (136), Expect = 1e-09
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = +3
Query: 114 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 257
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGK 214
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 74.9 bits (176), Expect = 2e-14
Identities = 32/54 (59%), Positives = 40/54 (74%)
Frame = +2
Query: 248 NG*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 409
NG SF YAWVLD+ + ERERG+T+DI FETS + ++DAPGH+DFI NM
Sbjct: 230 NGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNM 283
Score = 58.8 bits (136), Expect = 1e-09
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = +3
Query: 114 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 257
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGK 232
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 68.5 bits (160), Expect = 2e-12
Identities = 28/51 (54%), Positives = 40/51 (78%)
Frame = +3
Query: 108 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKD 260
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G++
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRE 154
Score = 57.2 bits (132), Expect = 4e-09
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +2
Query: 209 QTYHREVREGGPGNG*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGH 388
+ Y RE +E G S+ +W +D ERE+G T+++ FET K + TI+DAPGH
Sbjct: 142 EKYEREAKEKGRE----SWYLSWCMDTNDEEREKGKTVEVGRAYFETEKRHFTILDAPGH 197
Query: 389 RDFIKNM 409
+ F+ NM
Sbjct: 198 KSFVPNM 204
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 45.6 bits (103), Expect = 1e-05
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +2
Query: 281 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 409
+D E+ RGITI+ ++ET+K + ID PGH D+IKNM
Sbjct: 87 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNM 129
Score = 33.1 bits (72), Expect = 0.079
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 111 KEKTHINIVVIGHVDSGKSTTT 176
++K H+N+ IGHVD GK+T T
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLT 66
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 45.6 bits (103), Expect = 1e-05
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +2
Query: 281 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 409
+D E+ RGITI+ ++ET+K + ID PGH D+IKNM
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNM 130
Score = 33.1 bits (72), Expect = 0.079
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 111 KEKTHINIVVIGHVDSGKSTTT 176
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 45.6 bits (103), Expect = 1e-05
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +2
Query: 281 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 409
+D E+ RGITI+ ++ET+K + ID PGH D+IKNM
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNM 130
Score = 33.1 bits (72), Expect = 0.079
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 111 KEKTHINIVVIGHVDSGKSTTT 176
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 44.8 bits (101), Expect = 2e-05
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +2
Query: 281 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 409
+DK K E++RGITI++A +E+ + D PGH DFIKNM
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNM 125
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 117 KTHINIVVIGHVDSGKSTTT 176
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 44.8 bits (101), Expect = 2e-05
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +2
Query: 281 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNM 409
+DK K E++RGITI++A +E+ + D PGH DFIKNM
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNM 125
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 117 KTHINIVVIGHVDSGKSTTT 176
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 42.3 bits (95), Expect = 1e-04
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +2
Query: 278 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 397
+LDKL+ ERERGIT+ Y + +ID PGH DF
Sbjct: 76 MLDKLQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDF 115
Score = 32.3 bits (70), Expect = 0.14
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 129 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 245
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +2
Query: 278 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 397
V D L ERERGIT+ A + + + +ID PGH DF
Sbjct: 64 VTDFLDIERERGITVQSAAVNLDWKGHRINLIDTPGHVDF 103
Score = 34.3 bits (75), Expect = 0.034
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 129 NIVVIGHVDSGKSTTTGHLIYKCGGI 206
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 35.1 bits (77), Expect = 0.020
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 281 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 397
+D + ER+RGITI A + + IID PGH DF
Sbjct: 87 MDFMDLERQRGITIQSAATYVDWHGTNINIIDTPGHVDF 125
Score = 33.1 bits (72), Expect = 0.079
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 129 NIVVIGHVDSGKSTTTGHLIYKCGGID 209
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.10
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 200
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.10
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 200
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 32.3 bits (70), Expect = 0.14
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 129 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSNMLGYWTN 290
+I+ GH+D S GH +K GI E FE E ++ + P+ GY T+
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATS 1685
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 126 INIVVIGHVDSGKSTTT 176
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 126 INIVVIGHVDSGKSTTT 176
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 281 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 397
+D + E+ RGIT+ + + +ID+PGH DF
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDF 96
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 281 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 397
+D + E+ RGIT+ + + +ID+PGH DF
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDF 96
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 99 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGKD 260
PK +EK I + +V+ G TTG +CGG ++ R + + AQE KD
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWKD 1354
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 99 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGKD 260
PK +EK I + +V+ G TTG +CGG ++ R + + AQE KD
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWKD 1354
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 99 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGKD 260
PK +EK I + +V+ G TTG +CGG ++ R + + AQE KD
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWKD 1354
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 165 STTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSNMLGYWT 287
STTT HL+ + GG+ Q +GK N++G+ T
Sbjct: 234 STTTAHLVSQAGGLSPLATMP-SCNVQVLGKTKKNLIGFST 273
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 99 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 191
P K+ + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 99 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 191
P K+ + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z72511-6|CAA96659.2| 391|Caenorhabditis elegans Hypothetical
protein F55A11.5 protein.
Length = 391
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 180 HLIYKCGGIDKRTIEKFEKEAQEMGKDPSN 269
+L ++ GGIDK I K+++ + + K PS+
Sbjct: 359 YLSWRYGGIDKYIIFKWQESRKSLQKSPSS 388
>Z92782-9|CAE17814.1| 329|Caenorhabditis elegans Hypothetical
protein F14F8.12 protein.
Length = 329
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 119 LFLAHFWLVELWVY*FHFFTSQNNFF*HSPRITNCV 12
LFL + +++ FHF SQ + + PR T C+
Sbjct: 97 LFLLAVFNSLKYIFSFHFMNSQTSIHKYLPRFTLCI 132
>Z70751-1|CAA94751.1| 544|Caenorhabditis elegans Hypothetical
protein F11A3.1 protein.
Length = 544
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 102 LVSGVMGILISLFHFTKQFFLTLTTDYKLRVI 7
L+ G+ GI++S HF FLT +YK+R +
Sbjct: 257 LLKGMTGIVMS--HFEPNNFLTAVQNYKVRCL 286
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 26.2 bits (55), Expect = 9.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +2
Query: 284 DKLKAERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNM 409
D L E++RG +I I + Y + IID PGH +F M
Sbjct: 172 DILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEM 218
>U00052-1|AAK95880.2| 308|Caenorhabditis elegans Hypothetical
protein K02F3.5 protein.
Length = 308
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 303 RSAFSLSNT-QAYLKDPYPFPGPPSRT 226
RS F NT QA +PY +P P SRT
Sbjct: 71 RSEFPTDNTPQADYGNPYSYPRPYSRT 97
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 26.2 bits (55), Expect = 9.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +2
Query: 284 DKLKAERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNM 409
D L E++RG +I I + Y + IID PGH +F M
Sbjct: 47 DILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEM 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,178,044
Number of Sequences: 27780
Number of extensions: 170071
Number of successful extensions: 628
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -