Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20660
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   200   6e-52
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   2e-19
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 45   5e-05
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)                      31   0.85 
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   2.6  
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                29   2.6  
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)                    29   3.4  
SB_25454| Best HMM Match : zf-A20 (HMM E-Value=7.5)                    29   3.4  
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)                   29   4.5  
SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)                28   6.0  
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           28   6.0  
SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17)                    28   7.9  
SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       28   7.9  
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   7.9  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  200 bits (489), Expect = 6e-52
 Identities = 95/141 (67%), Positives = 113/141 (80%), Gaps = 2/141 (1%)
 Frame = +1

Query: 256 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPM 435
           GELHLEICLKDLEEDHACIP+KKS+PVVSYRE V+++S+Q+CLSKSPNKHNRLFM A P+
Sbjct: 524 GELHLEICLKDLEEDHACIPLKKSEPVVSYRECVSDKSNQMCLSKSPNKHNRLFMTAGPL 583

Query: 436 PDGLPEDIDEG-RVNPRDDFKTRARFLQKSTNTMLPKPVRFGALAPR-VRPNILVDCSKG 609
            + LPEDID+G  +NPR DFK RAR+L  +    + +  +  +  P    PN+LVD SKG
Sbjct: 584 EEKLPEDIDDGCEINPRQDFKIRARYLADTYGWDVNEARKIWSFGPEGTGPNLLVDVSKG 643

Query: 610 VQYLNEIKDSVVAGFQWAAKE 672
           VQYLNEIKDSVVAGFQWA KE
Sbjct: 644 VQYLNEIKDSVVAGFQWATKE 664



 Score =  152 bits (369), Expect = 2e-37
 Identities = 72/84 (85%), Positives = 77/84 (91%)
 Frame = +2

Query: 2   PSGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGL 181
           P GNI GLVGVDQFLVKTGTI+T+++ HNMK+MKFSVSPVVRVAVEPKNPADLPKLVEGL
Sbjct: 439 PCGNIVGLVGVDQFLVKTGTISTYEHCHNMKMMKFSVSPVVRVAVEPKNPADLPKLVEGL 498

Query: 182 KRLAKSDPMVQCINEESGEHIVAG 253
            RLAKSDPMVQ   EESGEHIVAG
Sbjct: 499 NRLAKSDPMVQSFTEESGEHIVAG 522


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
 Frame = +1

Query: 256 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPM 435
           GEL+L+  + DL   ++ I IK +DPV+++ ETV E S   C +++PNK N++ M A+P+
Sbjct: 501 GELYLDCIMHDLRRMYSEIDIKVADPVIAFCETVVETSSLKCFAETPNKKNKVTMIAEPL 560

Query: 436 PDGLPEDIDEGRVNPRDDFKTRARFLQKSTNTMLPKPVRFGALAP-RVRPNILVD----C 600
             GL EDI+  +V    + K    F Q   +  L       A  P    PNILVD     
Sbjct: 561 EKGLAEDIENEKVLISWNKKKLGEFFQTKYDWDLLAARSIWAFGPENTGPNILVDDTLPS 620

Query: 601 SKGVQYLNEIKDSVVAGFQWAAKE 672
                 LN +KDS++ GFQWA +E
Sbjct: 621 EVDKSLLNTVKDSIIQGFQWATRE 644



 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 37/87 (42%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
 Frame = +2

Query: 2   PSGNICGLVGVDQFLVKTGTITTFKN---AHNMKVMKFSVSPVVRVAVEPKNPADLPKLV 172
           P+GN   + GVDQ +VKT TIT  +    A+  + +KF+    +++AVEP NP++LPK++
Sbjct: 413 PAGNWVLIEGVDQPIVKTATITEVQGSEEAYIFRPLKFNTCSTIKIAVEPHNPSELPKML 472

Query: 173 EGLKRLAKSDPMVQCINEESGEHIVAG 253
           +GL+++ KS P++    EESGEH++ G
Sbjct: 473 DGLRKVNKSYPLLTTKVEESGEHVILG 499


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +1

Query: 256 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 357
           GE+HL+ C+ DL+  +AC+ +  SDP++ +RETV
Sbjct: 9   GEVHLQRCVDDLKRRYACVELNVSDPIIPFRETV 42


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +1

Query: 316 IKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLP--EDIDEGRVNPRDD 489
           I+K+     Y+E + +E++ L   +  N+H+ +   AQ  P GL     I+E + N R  
Sbjct: 216 IEKAQKAFEYKENIEKEAEALRKQQLENRHSLISSNAQYHPQGLETYPSINEYKKNSRMV 275

Query: 490 FK 495
           FK
Sbjct: 276 FK 277


>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1691

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 153 AGFLGSTATRTTGDTLNFITFMLWAFLKVVIVP-VLTKN*STPTRPQMLPE 4
           AG+  S+A+ TT   +N++TF      K V VP  L+ + S+P  P +L E
Sbjct: 621 AGYSTSSASSTTPKAVNYVTFKENHVSKEVSVPSPLSSDASSPASPSILGE 671


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -3

Query: 219  IHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTTGD 112
            I C MG D   RLR ST L R   F+GS     T D
Sbjct: 1062 IECNMGFDAVMRLRTSTGL-RPVDFVGSFYMSNTTD 1096


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -3

Query: 201  SDLARRLRPSTSLGRSAGFLGSTATRTTGDTLNFITFMLWAFLKV 67
            S+  RR +P T  GR+  FLG+ + R T    NF+ F+   F+++
Sbjct: 1690 SNDGRRFKPYTQFGRTKVFLGN-SDRNTVVGHNFLPFIKARFIRI 1733


>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +1

Query: 295 EDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRV 474
           +DH C  +     + +    V  E D+ CL + P +     M         P+  D GR 
Sbjct: 33  KDHTCAAL-----LYTKMTAVNLEGDEPCLMEKPREPRNNDMNTTHYGGKTPDPRDGGRD 87

Query: 475 NPRDDFKTR 501
            PRDD K +
Sbjct: 88  GPRDDEKQK 96


>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
          Length = 809

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +1

Query: 343 YRETVAEESDQLCLSKSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRD 486
           Y+         + L K  N H+   LF K + +P  L ED++EG V   D
Sbjct: 230 YKSISTRRELYMLLLKRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 279


>SB_25454| Best HMM Match : zf-A20 (HMM E-Value=7.5)
          Length = 320

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
 Frame = -1

Query: 401 LLGDFERQSWSDSSATVSRYDTTGSDFLIGM--QAWSSSRSLRQISRWSS-PHQRQCVLL 231
           LL  F+R  W+    T  +YDT G D   G+    W   R  R + R    P+    VLL
Sbjct: 170 LLPAFKR--WATFRRTYPQYDTGGEDPYFGVLCPEWGCQRRFRHLVREEERPNCESGVLL 227

Query: 230 ILH*YTAP-WGQIXXXXXXXXLAWADQQGFWAQQR 129
               Y +  W ++          WA Q   W + R
Sbjct: 228 PRRRYASSLWDRLSDPCVCADKGWAVQ---WPRHR 259


>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
          Length = 648

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 394 PNKHNRLFMKAQPMPDGLPEDIDEGRVNPRD 486
           PN  N  F+KA P+ DG   D + G +  RD
Sbjct: 413 PNTGNTEFVKAIPIEDGESHDSNYGTIESRD 443


>SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)
          Length = 348

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 316 IKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNP-RDDF 492
           +KK     S   +   +  +  L K   K ++   K + +PDGLPE+  +   +   D F
Sbjct: 25  VKKRRKPASRNPSSQHKKTEKKLKKVKEKVDQKLTKGKDIPDGLPEETSKKLFSAFADKF 84

Query: 493 KTRARFLQK 519
            TR R   K
Sbjct: 85  CTRIRIENK 93


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -2

Query: 511 RTERES*SHRGDLRDPHQCPLADHQAWAEPS*TDGCACWATLRDRAGPIPQLR 353
           R++  S  H G       C + D  +W+E   ++GC   A +R    P+  ++
Sbjct: 373 RSQGNSMLHAGMCAYRDSCDMNDWTSWSEDVTSEGCKVQARIRTYVSPLKHMQ 425


>SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 264 EFSTPATMCSPDSSLIHCTMGSDLARRLR-PSTSLGRSAGF 145
           E S P T+ SP SSL      SDL    +  +TS+G+   F
Sbjct: 315 ETSKPLTIASPQSSLTSVLTDSDLPTTSKSTATSIGQETSF 355


>SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17)
          Length = 232

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 337 VSYRETVAEESDQLCLS-KSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRD 486
           V +R  +   +D   L+ +  N H+   LF K + +P  L ED++EG V   D
Sbjct: 29  VKFRYVILNINDFAFLNNRRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 81


>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 427 QPMPDGLPEDIDEGRVNPRDDFKTRARFLQKSTNTMLPKP 546
           +P    LPE   E R  PR   K   + + ++ NTM  KP
Sbjct: 470 KPTKPLLPEGEGEERATPRPTRKPTKKIIPQTNNTMKTKP 509


>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 746

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 4/22 (18%)
 Frame = +1

Query: 430 PMPDGLPEDIDEGR----VNPR 483
           P+PDG+ E+IDEG+    +NPR
Sbjct: 721 PVPDGIYEEIDEGQIYDIINPR 742


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,644,834
Number of Sequences: 59808
Number of extensions: 505205
Number of successful extensions: 1277
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)