Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20660
         (674 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    26   0.95 
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   5.0  
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    24   5.0  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    24   5.0  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    23   6.7  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 376 AGPIPQLRSHGTTRQGQTS*LECKHG 299
           AGPIP  + H   +Q Q S L  KHG
Sbjct: 244 AGPIPSQQKHQQHQQQQQSVLLPKHG 269


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 13   HLWSRWSRSVLS 48
            H+W+RW R  LS
Sbjct: 1639 HIWNRWHREYLS 1650


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1977

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +1

Query: 229  IRRTHCRWCGELHLEIC---LKDLEEDHACIPIKKSDP 333
            +R+ HCR CG++    C      L E+    P++   P
Sbjct: 1822 LRKHHCRSCGQIFCAECSDYTAHLPEERLYQPVRLCGP 1859


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1978

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +1

Query: 229  IRRTHCRWCGELHLEIC---LKDLEEDHACIPIKKSDP 333
            +R+ HCR CG++    C      L E+    P++   P
Sbjct: 1823 LRKHHCRSCGQIFCAECSDYTAHLPEERLYQPVRLCGP 1860


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 355 VAEESDQLCLSKSPNKHNRLFMKAQPMP 438
           V    + LC + SPN +    +  QP P
Sbjct: 154 VNSRGNTLCAASSPNAYTNTTIAVQPAP 181


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,938
Number of Sequences: 2352
Number of extensions: 15567
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67741110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)