Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20660
(674 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 164 6e-41
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 95 5e-20
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 95 5e-20
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 89 3e-18
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 73 1e-13
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 46 2e-05
At3g17310.2 68416.m02213 methyltransferase family protein simila... 32 0.30
At3g17310.1 68416.m02212 methyltransferase family protein simila... 32 0.30
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 31 0.93
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 31 0.93
At2g47500.1 68415.m05929 kinesin motor protein-related 30 1.2
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 30 1.6
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ... 28 5.0
At5g44720.2 68418.m05479 molybdenum cofactor sulfurase family pr... 28 6.6
At5g44720.1 68418.m05480 molybdenum cofactor sulfurase family pr... 28 6.6
At1g68120.1 68414.m07781 expressed protein 28 6.6
At5g38500.1 68418.m04654 hypothetical protein contains Pfam prof... 27 8.7
At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate carboxylase/o... 27 8.7
At3g47480.1 68416.m05163 calcium-binding EF hand family protein ... 27 8.7
At3g42790.1 68416.m04474 PHD finger family protein contains PHD-... 27 8.7
At2g25730.1 68415.m03084 expressed protein 27 8.7
At1g78280.1 68414.m09122 transcription factor jumonji (jmjC) dom... 27 8.7
At1g70890.1 68414.m08179 major latex protein-related / MLP-relat... 27 8.7
At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma m... 27 8.7
At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma m... 27 8.7
At1g14940.1 68414.m01785 major latex protein-related / MLP-relat... 27 8.7
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 164 bits (398), Expect = 6e-41
Identities = 82/141 (58%), Positives = 101/141 (71%), Gaps = 2/141 (1%)
Frame = +1
Query: 256 GELHLEICLKDLEEDH-ACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQP 432
GELHLEICLKDL++D I KSDPVVS+RETV + S + +SKSPNKHNRL+M+A+P
Sbjct: 534 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVCDRSTRTVMSKSPNKHNRLYMEARP 593
Query: 433 MPDGLPEDIDEGRVNPRDDFKTRARFLQKSTNTMLPKPVRFGALAPRVR-PNILVDCSKG 609
M +GL E ID+GR+ PRDD K R++ L + + A P PN++VD KG
Sbjct: 594 MEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWAFGPETTGPNMVVDMCKG 653
Query: 610 VQYLNEIKDSVVAGFQWAAKE 672
VQYLNEIKDSVVAGFQWA+KE
Sbjct: 654 VQYLNEIKDSVVAGFQWASKE 674
Score = 116 bits (278), Expect = 2e-26
Identities = 58/86 (67%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 PSGNICGLVGVDQFLVKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVE 175
P GN +VG+DQF+ K T+T K +AH ++ MKFSVSPVVRVAV+ K +DLPKLVE
Sbjct: 447 PCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVE 506
Query: 176 GLKRLAKSDPMVQCINEESGEHIVAG 253
GLKRLAKSDPMV C EESGEHIVAG
Sbjct: 507 GLKRLAKSDPMVVCTMEESGEHIVAG 532
>At1g06220.2 68414.m00656 elongation factor Tu family protein similar
to Cryptosporidium parvum elongation factor-2 GB:U21667
GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 94.7 bits (225), Expect = 5e-20
Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 5/144 (3%)
Frame = +1
Query: 256 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPM 435
GEL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK N++ M A+P+
Sbjct: 647 GELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPL 706
Query: 436 PDGLPEDIDEGRVNPRDDFKTRARFLQKSTNTMLPKPVRFGALAP-RVRPNILVDCSKGV 612
GL EDI+ G V+ + K F + + L A P + PNIL+D +
Sbjct: 707 DRGLAEDIENGVVSIDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPT 766
Query: 613 Q----YLNEIKDSVVAGFQWAAKE 672
+ + +KDS+V GFQW A+E
Sbjct: 767 EVDRNLMMAVKDSIVQGFQWGARE 790
Score = 71.3 bits (167), Expect = 5e-13
Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Frame = +2
Query: 2 PSGNICGLVGVDQFLVKTGTITTF---KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLV 172
P G+ + GVD ++KT T+ ++ + + ++F+ PVV+ A EP NP++LPK+V
Sbjct: 559 PPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMV 618
Query: 173 EGLKRLAKSDPMVQCINEESGEHIVAG 253
EGL++++KS P+ EESGEH + G
Sbjct: 619 EGLRKISKSYPLAITKVEESGEHTILG 645
>At1g06220.1 68414.m00655 elongation factor Tu family protein similar
to Cryptosporidium parvum elongation factor-2 GB:U21667
GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 94.7 bits (225), Expect = 5e-20
Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 5/144 (3%)
Frame = +1
Query: 256 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPM 435
GEL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK N++ M A+P+
Sbjct: 647 GELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPL 706
Query: 436 PDGLPEDIDEGRVNPRDDFKTRARFLQKSTNTMLPKPVRFGALAP-RVRPNILVDCSKGV 612
GL EDI+ G V+ + K F + + L A P + PNIL+D +
Sbjct: 707 DRGLAEDIENGVVSIDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPT 766
Query: 613 Q----YLNEIKDSVVAGFQWAAKE 672
+ + +KDS+V GFQW A+E
Sbjct: 767 EVDRNLMMAVKDSIVQGFQWGARE 790
Score = 71.3 bits (167), Expect = 5e-13
Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Frame = +2
Query: 2 PSGNICGLVGVDQFLVKTGTITTF---KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLV 172
P G+ + GVD ++KT T+ ++ + + ++F+ PVV+ A EP NP++LPK+V
Sbjct: 559 PPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMV 618
Query: 173 EGLKRLAKSDPMVQCINEESGEHIVAG 253
EGL++++KS P+ EESGEH + G
Sbjct: 619 EGLRKISKSYPLAITKVEESGEHTILG 645
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 89.0 bits (211), Expect = 3e-18
Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 5/144 (3%)
Frame = +1
Query: 256 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPM 435
GEL+L+ +KDL E ++ + +K +DPVVS+ ETV E S C +++PNK N+L M A+P+
Sbjct: 633 GELYLDSIIKDLRELYSEVQVKVADPVVSFCETVVESSSMKCFAETPNKKNKLTMIAEPL 692
Query: 436 PDGLPEDIDEGRVNPRDDFKTRARFLQKSTNTMLPKPVRFGALAP-RVRPNILVDCSKGV 612
GL EDI+ G V+ + F + + L A P + NIL+D +
Sbjct: 693 DRGLAEDIENGVVSIDWNRVQLGDFFRTKYDWDLLAARSIWAFGPDKQGTNILLDDTLPT 752
Query: 613 Q----YLNEIKDSVVAGFQWAAKE 672
+ + +KDS+V GFQW A+E
Sbjct: 753 EVDRNLMMGVKDSIVQGFQWGARE 776
Score = 72.9 bits (171), Expect = 2e-13
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Frame = +2
Query: 2 PSGNICGLVGVDQFLVKTGTITTF---KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLV 172
P G+ + GVD ++KT T+ ++ + + +KF+ PVV+ A EP NP++LPK+V
Sbjct: 545 PPGSWVLIEGVDASIMKTATLCNASYDEDVYIFRALKFNTLPVVKTATEPLNPSELPKMV 604
Query: 173 EGLKRLAKSDPMVQCINEESGEHIVAG 253
EGL++++KS P+ EESGEH + G
Sbjct: 605 EGLRKISKSYPLAITKVEESGEHTILG 631
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 73.3 bits (172), Expect = 1e-13
Identities = 30/82 (36%), Positives = 55/82 (67%)
Frame = +2
Query: 5 SGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLK 184
+GN+ + G+ ++ K+ T+++ +N + M+F VSP +RVA+EP +PAD+ L++GL+
Sbjct: 500 AGNVVAIRGLGPYISKSATLSSTRNCWPLASMEFQVSPTLRVAIEPSDPADMSALMKGLR 559
Query: 185 RLAKSDPMVQCINEESGEHIVA 250
L ++DP V+ GEH++A
Sbjct: 560 LLNRADPFVEITVSARGEHVLA 581
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +1
Query: 256 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQL 378
GE+HLE C+KDL+E A + ++ S P+VSYRET+ + L
Sbjct: 584 GEVHLERCVKDLKERFAKVNLEVSPPLVSYRETIEGDGSNL 624
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +2
Query: 5 SGNICGLVGVDQFLVKTG-TITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGL 181
+G+I L G+ + TG T++ +N ++ M F PV++VA+EPK AD+ K+ GL
Sbjct: 458 TGDIIALAGLKDTI--TGETLSDPENPVVLERMDFP-DPVIKVAIEPKTKADIDKMATGL 514
Query: 182 KRLAKSDPMVQ-CINEESGEHIVAGV 256
+LA+ DP +EE + ++ G+
Sbjct: 515 IKLAQEDPSFHFSRDEEMNQTVIEGM 540
>At3g17310.2 68416.m02213 methyltransferase family protein similar
to cytosine methyltransferase (GI:7658293) [Arabidopsis
thaliana]
Length = 710
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +1
Query: 385 SKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARFLQKSTNTMLPKPVRFGAL 564
S S + L ++ P + + IDE N +DDF+ L KST T P P G +
Sbjct: 50 SSSGSNVKSLLIEMGFCPTLVQKAIDE---NGQDDFELLLEILTKSTETEPPGPSFHGLM 106
Query: 565 APRVRPNI 588
P+ P+I
Sbjct: 107 EPKPEPDI 114
>At3g17310.1 68416.m02212 methyltransferase family protein similar
to cytosine methyltransferase (GI:7658293) [Arabidopsis
thaliana]
Length = 710
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +1
Query: 385 SKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARFLQKSTNTMLPKPVRFGAL 564
S S + L ++ P + + IDE N +DDF+ L KST T P P G +
Sbjct: 50 SSSGSNVKSLLIEMGFCPTLVQKAIDE---NGQDDFELLLEILTKSTETEPPGPSFHGLM 106
Query: 565 APRVRPNI 588
P+ P+I
Sbjct: 107 EPKPEPDI 114
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 30.7 bits (66), Expect = 0.93
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 5 SGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLK 184
+G I + G++ T T + M M PV+ +AV+P + + + L
Sbjct: 427 AGQIVAVFGIE--CASGDTFTDGSVKYTMTSMNVP-EPVMSLAVQPVSKDSGGQFSKALN 483
Query: 185 RLAKSDPMVQC-INEESGEHIVAGV 256
R K DP + ++ ESG+ I++G+
Sbjct: 484 RFQKEDPTFRVGLDPESGQTIISGM 508
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 30.7 bits (66), Expect = 0.93
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 5 SGNICGLVGVDQFLVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLK 184
+G I + G++ T T + M M PV+ +AV+P + + + L
Sbjct: 427 AGQIVAVFGIE--CASGDTFTDGSVKYTMTSMNVP-EPVMSLAVQPVSKDSGGQFSKALN 483
Query: 185 RLAKSDPMVQC-INEESGEHIVAGV 256
R K DP + ++ ESG+ I++G+
Sbjct: 484 RFQKEDPTFRVGLDPESGQTIISGM 508
>At2g47500.1 68415.m05929 kinesin motor protein-related
Length = 974
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 74 KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGL 181
+N N S+S +VR + K P D+PKL+E L
Sbjct: 218 ENDSNKLSSPSSLSTLVRAVLSDKKPEDVPKLIESL 253
>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 255
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 364 ESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDI 459
E + LCL PN+H + + A+ +P LPE +
Sbjct: 44 EKENLCLYGHPNEHWEVNLPAEEVPPELPEPV 75
>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
contains Pfam profile: PF01363 FYVE zinc finger
Length = 601
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 229 IRRTHCRWCGELHLEICLKDLEEDHACIPIKKSDPVVSYRE-TVAEESDQLCLSKSPNKH 405
IRR HCR CG++ + C + + + + P V + +AE S +L +K
Sbjct: 472 IRRHHCRNCGDVFCDKC----TQGRIALTAEDNAPQVRVCDRCMAEVSQRLSNAKETTGR 527
Query: 406 NRLFMKAQPMPDGLPEDIDEGR 471
N + + L E+++ R
Sbjct: 528 NVSLQSHEDLARKLQEEMERNR 549
>At5g44720.2 68418.m05479 molybdenum cofactor sulfurase family
protein weak similarity to molybdenum cofactor sulfurase
(LOS5/ABA3) [Arabidopsis thaliana] GI:15407262; contains
Pfam profiles PF03476: MOSC N-terminal beta barrel
domain, PF03473: MOSC domain
Length = 230
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 526 NTMLPKPVRFGALAPRVRPNILVD-CSK-GVQYLNEIK 633
NT+LP+PV R RPNILVD C G +EIK
Sbjct: 177 NTLLPEPVPIN----RFRPNILVDNCDPFGEDLWDEIK 210
>At5g44720.1 68418.m05480 molybdenum cofactor sulfurase family
protein weak similarity to molybdenum cofactor sulfurase
(LOS5/ABA3) [Arabidopsis thaliana] GI:15407262; contains
Pfam profiles PF03476: MOSC N-terminal beta barrel
domain, PF03473: MOSC domain
Length = 308
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 526 NTMLPKPVRFGALAPRVRPNILVD-CSK-GVQYLNEIK 633
NT+LP+PV R RPNILVD C G +EIK
Sbjct: 177 NTLLPEPVPIN----RFRPNILVDNCDPFGEDLWDEIK 210
>At1g68120.1 68414.m07781 expressed protein
Length = 270
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 660 PLESSHNRVLNFIEVLNSFGAIDQDVGAYPR 568
P S H++ LNFI N +G V +YPR
Sbjct: 39 PFLSPHSQNLNFITPSNVYGGGSSSVVSYPR 69
>At5g38500.1 68418.m04654 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 411
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 292 EEDHACIPIKKSDPVVSYRETVAEESD--QLCLSKSPNKHNRLFMKAQPMPDGL 447
EE + +K + S ++TV+EE D + LS P K +K Q P+G+
Sbjct: 25 EEQRRRLLAEKREDSKSQKKTVSEEDDSEKRFLSHVPRKKRSSLVKRQQKPNGV 78
>At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate
carboxylase/oxygenase large subunit
N-methyltransferase-related contains weak similarity to
Swiss-Prot:P94026 ribulose-1,5 bisphosphate
carboxylase/oxygenase large subunit N-
methyltransferase, chloroplast precursor (Ribulose-
bisphosphate-carboxylase]-lysine N-methyltransferase,
RuBisCO methyltransferase, RuBisco LSMT, rbcMT)
[Nicotiana tabacum]
Length = 483
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 511 LQKSTNTMLPKPVRF--GAL-APRVRPNILVDCSKGVQ 615
LQ TNT + KP F G + APR R N+L D GV+
Sbjct: 7 LQFLTNTFISKPQGFCNGIVSAPRPRSNLLRDRQNGVR 44
>At3g47480.1 68416.m05163 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 183
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 116 PVVRVAVEPKNPADLPKLVEGLKRLAK-SDPMVQCINEESGEHIV 247
P+++ V P N AD+ VE +K + S+ + +C+ EE E+++
Sbjct: 63 PIIKKVVVP-NRADIKTSVEEVKAIIDDSEALYECLIEEGEEYLL 106
>At3g42790.1 68416.m04474 PHD finger family protein contains
PHD-finger domain, INTERPRO:IPR001965
Length = 250
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +1
Query: 268 LEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGL 447
+E KD + I + V + + E + LCL PN+ + + A+ +P L
Sbjct: 13 VEEVFKDFKGRRTAIVKALTTDVQEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPEL 72
Query: 448 PE 453
PE
Sbjct: 73 PE 74
>At2g25730.1 68415.m03084 expressed protein
Length = 2464
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +2
Query: 554 LVLWPRG---YAPTSWSIAPKEFSTSMKLRTLLWLDSSGPLR 670
L L+PR A W + P + +T KL LLW S LR
Sbjct: 419 LTLFPRLRPLVASMGWDLLPGKTATRRKLMRLLWTSDSQALR 460
>At1g78280.1 68414.m09122 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam PF00646: F-box
domain; contains Pfam PF02373: jmjC domain; similar to
apoptotic cell clearance receptor PtdSerR (GI:11037740)
[Mus musculus]
Length = 916
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 454 DIDEGRVNPRDDFKTRARFLQKSTNTMLPKPVRFGALAPRVRPNILVDCSKG 609
D D +N F + L++ N P P FG+L+ V P I+ KG
Sbjct: 601 DFDASMLNSEFPFGIWNKTLREHKNQGKPAPDSFGSLSSHVWPYIITKRCKG 652
>At1g70890.1 68414.m08179 major latex protein-related / MLP-related
low similarity to major latex protein {Papaver
somniferum}[GI:294062] ; contains Pfam profile PF00407:
Pathogenesis-related protein Bet v I family
Length = 158
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -3
Query: 435 HGLSLHEQTVVLVGRL*ETELVRFLSYG-LTVRHDRVRLLDWNASMVLLKILKTDLKMEF 259
HG LHE VG + + +++ G LTV +++ +D +++ K+L+ DL E+
Sbjct: 44 HGCELHEGDWGKVGSI---VIWKYVHDGKLTVGKNKIEAVDPEKNLITFKVLEGDLMNEY 100
Query: 258 ST 253
+
Sbjct: 101 KS 102
>At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma
membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid
envelope ATPase 1 (PEA1) identical to SP|Q37145
Calcium-transporting ATPase 1, plasma membrane-type (EC
3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
ATPase 1) {Arabidopsis thaliana}; identical to cDNA
envelope Ca2+-ATPase (PEA1) chloroplast gene encoding
chloroplast protein GI:509809
Length = 946
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 235 RTHCRWCGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEE 366
R HC+ E+ L+ C K + +D +P+ + S+ + + EE
Sbjct: 577 RAHCKGASEIVLDSCDKYINKDGEVVPLDEKS--TSHLKNIIEE 618
>At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma
membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid
envelope ATPase 1 (PEA1) identical to SP|Q37145
Calcium-transporting ATPase 1, plasma membrane-type (EC
3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
ATPase 1) {Arabidopsis thaliana}; identical to cDNA
envelope Ca2+-ATPase (PEA1) chloroplast gene encoding
chloroplast protein GI:509809
Length = 1020
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 235 RTHCRWCGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEE 366
R HC+ E+ L+ C K + +D +P+ + S+ + + EE
Sbjct: 577 RAHCKGASEIVLDSCDKYINKDGEVVPLDEKS--TSHLKNIIEE 618
>At1g14940.1 68414.m01785 major latex protein-related / MLP-related
low similarity to major latex protein {Papaver
somniferum}[GI:294060] ; contains Pfam profile PF00407:
Pathogenesis-related protein Bet v I family
Length = 155
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 19 WSRW-SRSVLSQDWYNHHFQECPQHEGD 99
+ +W + + + QD HH Q C H+GD
Sbjct: 21 YKKWRNENHVFQDAVGHHIQGCTMHDGD 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,663,257
Number of Sequences: 28952
Number of extensions: 336401
Number of successful extensions: 1007
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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