Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20659
         (569 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8SV02 Cluster: Putative uncharacterized protein ECU07_...    35   1.5  
UniRef50_A3N152 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  
UniRef50_Q64YV8 Cluster: Putative uncharacterized protein; n=6; ...    32   8.2  
UniRef50_Q5FL20 Cluster: Competence protein; n=1; Lactobacillus ...    32   8.2  

>UniRef50_Q8SV02 Cluster: Putative uncharacterized protein
           ECU07_0900; n=1; Encephalitozoon cuniculi|Rep: Putative
           uncharacterized protein ECU07_0900 - Encephalitozoon
           cuniculi
          Length = 372

 Score = 34.7 bits (76), Expect = 1.5
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = -3

Query: 453 SNRNALLLHGRNRQGGGTYPRGLKSGPTNMRDRRVIYVFKHYNHRNRISTYKFY 292
           + RNALL+HG N  G  TY RGL +G  +    RV + F     R+++++  F+
Sbjct: 112 TKRNALLVHGFNGSGNSTYMRGL-AGHLSREGYRV-FCFNARGIRSKLNSPVFF 163


>UniRef50_A3N152 Cluster: Putative uncharacterized protein; n=1;
           Actinobacillus pleuropneumoniae L20|Rep: Putative
           uncharacterized protein - Actinobacillus
           pleuropneumoniae serotype 5b (strain L20)
          Length = 297

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
 Frame = +1

Query: 166 SWSGDFICTTHPTSVVILRQFM*S*IYSYTIRAIVNVRIYISIKFICRYPVSMI-VMFEN 342
           SW G F+   +P    I R F  S IYS+    I    I IS+ FI    +  I     N
Sbjct: 150 SWEGVFVFVGYPVYFHIRRTFQLSNIYSFIFEII--FLIPISLYFIWNTDMDFIYAQNPN 207

Query: 343 VNY--APISHVGRTTFESARVGTTALPIS 423
           + Y  A +S V  T   S  + +T LP +
Sbjct: 208 IYYFIAVLSVVSGTALLSYTLASTILPFN 236


>UniRef50_Q64YV8 Cluster: Putative uncharacterized protein; n=6;
           Bacteroides|Rep: Putative uncharacterized protein -
           Bacteroides fragilis
          Length = 656

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = -3

Query: 564 TWC*VVTEPIDIYNVDALPP*DTSSKVSV*LQRLPHPSNRNALLLHGRNRQGGGTYP-RG 388
           TW    ++P D   +D +   ++ S   + ++RLP  +   +L+    N QGG  Y   G
Sbjct: 376 TWS-YTSDPADREYIDIMGANESCSNPGIGMKRLPGQNWSASLVRRVPNLQGGAQYTIEG 434

Query: 387 LKSGP-TNMRDRRVIYVFKHYNH 322
            K GP   +  R   YV+K++++
Sbjct: 435 KKYGPHAYVASRSGYYVWKNWDN 457


>UniRef50_Q5FL20 Cluster: Competence protein; n=1; Lactobacillus
           acidophilus|Rep: Competence protein - Lactobacillus
           acidophilus
          Length = 334

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = +1

Query: 208 VVILRQFM*S*IYSYT-IRAIVNVRIYISIKFICRYPVSMIVMFENVNYAPISHVG 372
           ++IL   + S IY +T I +++N + YIS+K + RYP+   ++   VNY  +  +G
Sbjct: 154 ILILIILIGSGIYFFTRIISLLNKQDYISMKKLIRYPIIGRIILLYVNYLLVYDIG 209


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,428,704
Number of Sequences: 1657284
Number of extensions: 11345374
Number of successful extensions: 24968
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24949
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)