Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20659
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0126 + 982163-982527,983006-983204,984141-984222,984284-98...    30   1.5  
07_01_0864 - 7185070-7185141,7185274-7185402,7185585-7185695,718...    29   3.4  
08_02_1078 + 24179558-24179936,24180577-24180634,24180721-241808...    28   4.6  
01_06_1749 - 39636951-39638102                                         28   6.0  
08_02_1461 - 27299891-27301870                                         27   8.0  

>03_01_0126 +
           982163-982527,983006-983204,984141-984222,984284-984360,
           984548-984622,984725-984790,985220-985315,985424-985540,
           985777-985869,986052-986153,986239-986325,986401-986433
          Length = 463

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 437 YCFTAEIGRAVVPTRADSKVVLPTCEIGA*FTFSNITIIET 315
           +C  A +G  V PT +   V+L    I A F ++N+ I+E+
Sbjct: 314 FCEKASMGCLVTPTLSIGSVLLQQAAIQASFHYNNVEIVES 354


>07_01_0864 -
           7185070-7185141,7185274-7185402,7185585-7185695,
           7186114-7186292,7186479-7186576,7186691-7186956,
           7187895-7188050,7188131-7188319,7188711-7188824,
           7189131-7189273,7189683-7189818,7189954-7190058
          Length = 565

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -3

Query: 474 LQRLPHPSNRNAL-LLHGRNRQGGGTYPR-GLKSGPTNMRDRRV-IYVFKHYNHRNRIST 304
           L R PHP++   L LL      GGG+ PR G +   +  + RRV I VF  Y+     ST
Sbjct: 18  LHRHPHPAHHRRLRLLPLVAGGGGGSPPRVGRRIRASREKGRRVGIRVFARYSQAQDFST 77


>08_02_1078 +
           24179558-24179936,24180577-24180634,24180721-24180804,
           24180908-24181010,24181359-24181649
          Length = 304

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 345 YVFKHYNHRNRISTYKFYRYI 283
           Y++ H NHR  +  YK ++YI
Sbjct: 219 YIWGHVNHRPTVGRYKHHKYI 239


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 481 SIVTTAAPPFKPKRITASRQK*AGRWYLPARTQK 380
           S+ + AAPPF P RIT+      GR +  +  +K
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGRAFFVSVARK 198


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 459 HPSNRNALLLHGRNRQGGGTYPRGLKSGP--TNMRDRRVIYVFKHYNH 322
           H ++    LL GR R GGG + RGL   P  + M   R  Y++    H
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSRMTGARYPYLWMSAAH 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,006,327
Number of Sequences: 37544
Number of extensions: 312353
Number of successful extensions: 612
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)