Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20659
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8917| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.2  
SB_15287| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_55399| Best HMM Match : C1_4 (HMM E-Value=4.8)                      28   4.7  
SB_45207| Best HMM Match : PAN (HMM E-Value=0.0013)                    28   6.2  
SB_1127| Best HMM Match : Acetyltransf_1 (HMM E-Value=9.4e-19)         28   6.2  
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_8917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 213 YLTTVYVIVDLFIYDTCNRKCTNLYIDKIYM*ISCFDDC 329
           Y+T+VY +VD++I  TC     ++Y+  +Y  +  +  C
Sbjct: 55  YITSVYTLVDMYI--TCVYTLVDMYVTCVYTLVDMYVTC 91


>SB_15287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 213 YLTTVYVIVDLFIYDTCNRKCTNLYIDKIYM*ISCFDDC 329
           Y+T VY +VD+++  TC     ++YI  +Y  +  +  C
Sbjct: 123 YITCVYTLVDMYV--TCVYTLVDVYITSVYTLVDMYVTC 159



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 213 YLTTVYVIVDLFIYDTCNRKCTNLYIDKIYM*ISCFDDC 329
           Y+T VY +VD++I  TC     ++YI  +Y  +  +  C
Sbjct: 57  YITCVYTLVDMYI--TCVYTLVDMYITCVYTLVDMYITC 93



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 213 YLTTVYVIVDLFIYDTCNRKCTNLYIDKIYM*ISCFDDC 329
           Y+T VY +VD++I  TC     ++Y+  +Y  +  +  C
Sbjct: 13  YITCVYTLVDMYI--TCVYTLVDMYVTCVYTLVDMYVTC 49



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 213 YLTTVYVIVDLFIYDTCNRKCTNLYIDKIYM*ISCFDDC 329
           Y+T VY +VD++I  TC     ++YI  +Y  +  +  C
Sbjct: 46  YVTCVYTLVDMYI--TCVYTLVDMYITCVYTLVDMYITC 82



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 213 YLTTVYVIVDLFIYDTCNRKCTNLYIDKIYM*ISCFDDC 329
           Y+T VY +VD++I  TC     ++Y+  +Y  +  +  C
Sbjct: 90  YITCVYTLVDMYI--TCVYTLVDMYVTCVYTLVDMYITC 126



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 213 YLTTVYVIVDLFIYDTCNRKCTNLYIDKIY 302
           Y+T+VY +VD+++  TC     ++YI  +Y
Sbjct: 145 YITSVYTLVDMYV--TCVYTLVDVYITSVY 172


>SB_55399| Best HMM Match : C1_4 (HMM E-Value=4.8)
          Length = 335

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/58 (25%), Positives = 21/58 (36%)
 Frame = -3

Query: 438 LLLHGRNRQGGGTYPRGLKSGPTNMRDRRVIYVFKHYNHRNRISTYKFYRYINSYIYD 265
           L+ HG+N        R     P N       Y + +Y +      Y +Y Y   Y YD
Sbjct: 237 LVFHGQNEDAIKMLTRYRDKNPENPNAHSYYYYYYYYYYYYYYYYYYYYYYYYYYYYD 294


>SB_45207| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 251

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 207 RCRVRCANKISTPRTSQRASDFYEHRKREQRTIFVYVKHLCFDH 76
           RC +   +K + P +   + D YE+   EQR I ++  +  F+H
Sbjct: 85  RCELLDEDKDTVPISRFLSDDNYEYYDLEQRVIRIFPVYCSFEH 128


>SB_1127| Best HMM Match : Acetyltransf_1 (HMM E-Value=9.4e-19)
          Length = 317

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 151 GSLASSWSGDFICTTHPTS 207
           G  AS WS   +C+THP++
Sbjct: 6   GMNASEWSATMVCSTHPSA 24


>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 282  NSYIYDCTYRI*INLRSHKLS*DNNRCR 199
            N Y Y  T+ +  NL SH  +  N RCR
Sbjct: 1689 NWYRYKLTFEVRTNLESHTQTIHNTRCR 1716


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 453 SNRNALLLHGRNRQGGGTYPRGLKSG 376
           S+ N+  L  +NR+G GTYP  L+SG
Sbjct: 724 SSDNSFSLEDKNREGPGTYP--LRSG 747


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,510,423
Number of Sequences: 59808
Number of extensions: 391219
Number of successful extensions: 801
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)