Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20659
         (569 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16430.2 68415.m01882 purple acid phosphatase (PAP10) identic...    30   0.95 
At5g10820.1 68418.m01257 integral membrane transporter family pr...    29   2.2  
At5g06440.2 68418.m00722 expressed protein similar to unknown pr...    27   6.7  
At5g06440.1 68418.m00721 expressed protein similar to unknown pr...    27   6.7  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    27   6.7  

>At2g16430.2 68415.m01882 purple acid phosphatase (PAP10) identical
           to purple acid phosphatase (PAP10) GI:20257482 from
           [Arabidopsis thaliana]
          Length = 468

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 336 KHYNHRNRISTYKFYRYINSYIYDCTYR 253
           KH  H  + +TYKFY Y + +I+ C  R
Sbjct: 99  KHKAH-GKTNTYKFYNYTSGFIHHCPIR 125


>At5g10820.1 68418.m01257 integral membrane transporter family
           protein contains 11 transmembrane domains; similar to
           folate/methotrexate transporter FT1 (GI:5813863)
           {Leishmania donovani};
           lignostilbene-alpha,beta-dioxygenase gene, Synechococcus
           PCC7942, EMBL:AF055873
          Length = 503

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 109 DSALFAFTMLIKIGGSLASSWSGDFI 186
           +   FAF M I   G LAS W G F+
Sbjct: 410 EGTFFAFLMCIDSFGQLASKWGGGFV 435


>At5g06440.2 68418.m00722 expressed protein similar to unknown
           protein (gb|AAF23188.1)
          Length = 479

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 177 STPRTSQRASDFYEHRKREQRT 112
           S P+T + +SDF E  KRE+ T
Sbjct: 428 SVPQTQESSSDFSEEEKREEDT 449


>At5g06440.1 68418.m00721 expressed protein similar to unknown
           protein (gb|AAF23188.1)
          Length = 405

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 177 STPRTSQRASDFYEHRKREQRT 112
           S P+T + +SDF E  KRE+ T
Sbjct: 354 SVPQTQESSSDFSEEEKREEDT 375


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 139  IKIGGSLASSWSGDFICTTHPTSVVILRQ 225
            + I GS AS W    IC++HP++ +++ +
Sbjct: 974  VTILGSTASMWLLSIICSSHPSNRLVVME 1002


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,007,461
Number of Sequences: 28952
Number of extensions: 249907
Number of successful extensions: 471
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)