Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20658
         (415 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.1  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    20   8.3  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    20   8.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 194  FENRFLRC*DSWAD 235
            FEN  ++  DSWAD
Sbjct: 1439 FENLIVKAHDSWAD 1452


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 401 LCRIRHETYFIWH*LK 354
           LC+  ++T F+W+ +K
Sbjct: 160 LCKEANKTAFLWYHIK 175


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -2

Query: 66  LFLCSLCYKQTRNTETCSFK 7
           +FLC L  ++  N +  ++K
Sbjct: 263 IFLCDLIRREIANVQVLAYK 282


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,727
Number of Sequences: 336
Number of extensions: 2144
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)