Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20658
(415 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 28 0.66
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 28 0.66
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 27 0.87
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 0.87
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 1.5
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 26 2.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 4.7
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t... 25 6.1
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 24 8.1
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 24 8.1
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 27.9 bits (59), Expect = 0.66
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 135 PRDATVFDNQHSEVAIEKSTSKIDSSDV-KIPGRIWCEFEEQQRLRFVRNIVFPKA 299
P +A + + + KS I++S V K+ G +W ++ R+R+ + F KA
Sbjct: 106 PPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSEFYKA 161
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 27.9 bits (59), Expect = 0.66
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 135 PRDATVFDNQHSEVAIEKSTSKIDSSDV-KIPGRIWCEFEEQQRLRFVRNIVFPKA 299
P +A + + + KS I++S V K+ G +W ++ R+R+ + F KA
Sbjct: 106 PPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSEFYKA 161
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 27.5 bits (58), Expect = 0.87
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 250 SNSHHIRPGILTSEESIFEVDFSIATSECWLSKTVAS 140
SNSH+ P EE + + DF ++ +S V+S
Sbjct: 325 SNSHNSLPYSANEEEDVLQADFLVSQQSSMVSSYVSS 361
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 27.5 bits (58), Expect = 0.87
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = -1
Query: 283 MFLTNRSLCCSSNSH--HIRPGILTSEE---SIFEVDFSIATSECWL 158
++L N + CS + H ++ P EE S FEV S+AT++ W+
Sbjct: 596 VYLRNPTEVCSPSRHMFNVAPKFEDGEEYEKSHFEVQLSLATTQPWI 642
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 1.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +3
Query: 138 RDATVFDNQHSE-----VAIEKSTSKIDSSDVKIPGRI 236
R TV D HS+ + E TSK+D+S K PG++
Sbjct: 487 RTWTVIDPHHSQSFDNDILAEIPTSKLDNSSQKSPGKL 524
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -3
Query: 311 FHKNSLWEDNVPDKSQSLLFFELAPYPPRNLNI*GIYFRSRLFD 180
+H N ++ ++ QS + + Y N N+ G+Y + LFD
Sbjct: 80 YHVNIIYGFPEKEEKQSNIIYNSCIYITENGNLGGVYRKVHLFD 123
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 4.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 247 NSHHIRPGILTSEESIFEVD 188
NSH + PG L EE ++E +
Sbjct: 1936 NSHILDPGFLKEEECVYEFE 1955
>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
translocase complex subunit Tim23|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +3
Query: 183 EKSTSKIDSSDVKIP 227
E+ TSKIDSS++++P
Sbjct: 11 EEPTSKIDSSELQVP 25
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 24.2 bits (50), Expect = 8.1
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -2
Query: 84 FSVDAPLFLCSLCYKQTRNTETC 16
FS D LF YK N TC
Sbjct: 14 FSPDGRLFQAEYAYKAVENASTC 36
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 24.2 bits (50), Expect = 8.1
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -1
Query: 193 VDFSIAT-SECWLSKTVASLGNANTNTSTVRNIKITKL 83
V+ S AT S WL+ T ++ G +TN+++ + +TKL
Sbjct: 225 VNASNATNSTFWLNGTNSTNGTNSTNSTSTTSHSLTKL 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,671,127
Number of Sequences: 5004
Number of extensions: 31339
Number of successful extensions: 88
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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