Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20658
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0507 + 3777505-3777762,3780286-3780390,3780740-3780796,378...    27   4.5  
04_04_1645 + 35024237-35024977                                         27   4.5  
02_01_0735 + 5484398-5484400,5484670-5484773,5485012-5485138,548...    27   4.5  
01_06_0851 + 32455364-32458050,32458883-32458922                       27   4.5  
01_06_0501 - 29836545-29836640,29836752-29836855,29837034-298370...    27   7.8  

>07_01_0507 +
           3777505-3777762,3780286-3780390,3780740-3780796,
           3781534-3781863
          Length = 249

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 334 TASVTNTYSIRIAFGKTMFLTNRSLC 257
           TAS  +TYS+ IA GK   +T   LC
Sbjct: 105 TASKLSTYSMAIADGKRTRITKEDLC 130


>04_04_1645 + 35024237-35024977
          Length = 246

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 223 FLGGYGASSKNNRDCDLSGTLSSQRLFLWNMC 318
           FLGG G     N  C LS + S+   + W  C
Sbjct: 10  FLGGGGGGGGGNDACSLSSSSSTASSWQWPSC 41


>02_01_0735 +
           5484398-5484400,5484670-5484773,5485012-5485138,
           5485212-5485306,5485597-5485720,5486523-5486603,
           5487177-5487275,5487416-5487583,5487688-5487775,
           5487860-5487930,5488000-5488068,5488368-5488499,
           5488740-5488946
          Length = 455

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -1

Query: 310 SIRIAFGKTMFLTNRSLCCSSNSHHIRPGILTSEESIFEVDFSI---ATSECWLSKTVAS 140
           S+ + F  T+      + CS+N    + G +T+E  IFE+   +    T+ C  S   + 
Sbjct: 234 SVSMFFYNTLHPPQLPVKCSNNLGAFKVGTVTNESFIFEIISGLRGAGTNSCSSSIDASK 293

Query: 139 LGNANT 122
             NA T
Sbjct: 294 FPNATT 299


>01_06_0851 + 32455364-32458050,32458883-32458922
          Length = 908

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 337 HLKRIHFS*CQIKYVSCRIRQRIFN 411
           +L R+HF  C+I+Y    I QR+FN
Sbjct: 331 YLVRLHF--CEIQYPITMINQRVFN 353


>01_06_0501 -
           29836545-29836640,29836752-29836855,29837034-29837081,
           29837188-29837305,29837812-29838007,29838089-29838210,
           29839409-29839831
          Length = 368

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 289 KTMFLTNRSLCCSSNSHHIRPGILTSEESIFEVDFS 182
           K    T R+LC S  S   R G L +E +  E +FS
Sbjct: 182 KNWLKTARNLCSSDESKKFRLGSLENEIAALEKEFS 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,193,673
Number of Sequences: 37544
Number of extensions: 187489
Number of successful extensions: 460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)