Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20658
         (415 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                29   1.5  
SB_42714| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_44003| Best HMM Match : DUF658 (HMM E-Value=1.1)                    27   4.6  
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_54574| Best HMM Match : WD40 (HMM E-Value=0)                        27   4.6  
SB_43816| Best HMM Match : DUF755 (HMM E-Value=6.3)                    27   6.1  
SB_35717| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1145

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 259 CCSSNSHHIRPGILTSEESIFEVDFSIATSECWLSKTVASLG 134
           CCSS   +  P   +SEE   +   +  T +  +S +V SLG
Sbjct: 316 CCSSEGKNAEPSCCSSEEECCDEVIADETRKLLISSSVPSLG 357


>SB_42714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 221 DSWADMVRVRRTTETAICQEHCLPKGYS 304
           D   D+  +RR    A+CQ  C P GYS
Sbjct: 640 DGLCDLALLRRRHYKAVCQGVCSPAGYS 667


>SB_44003| Best HMM Match : DUF658 (HMM E-Value=1.1)
          Length = 572

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -1

Query: 274 TNRSLCCSSNSHHIRPGILTSEESIFEVDFSIATSECWLSK 152
           T+  +   S+S+HIR    + EES+FEV+ S+A +    S+
Sbjct: 323 THLKITSDSSSNHIR--FDSEEESVFEVEESLAANSAQKSQ 361


>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 266 AIC-QEHCLPKGYSYGICVSNTCSCI*KGYIL 358
           A C Q  C+P+  + G+CV+  C C  +GY +
Sbjct: 465 ATCKQAECVPECLNGGVCVNRQCQCP-QGYTM 495


>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1050

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 211 EESIFEVDFSIATSECWLSKTVASLGNANTNTSTVRNIKITK 86
           ++SI  + FS  T + W SKT A LG    +     ++ I+K
Sbjct: 729 DDSIVAMGFSDTTVQLWNSKTFARLGVYKGHKGWAHSVGISK 770


>SB_43816| Best HMM Match : DUF755 (HMM E-Value=6.3)
          Length = 539

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 305 KNSLWEDNVPDKSQSLLFFELAPY 234
           + +L  D +P+K  SL  FELAP+
Sbjct: 411 RKALGPDRIPNKVWSLFAFELAPF 434


>SB_35717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 230 ADMVRVRRTTETAICQEHCLPKGY 301
           A ++ + RTT T  CQ+ CL KGY
Sbjct: 129 ATLLDITRTT-TVQCQQDCLEKGY 151


>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1994

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = -1

Query: 334 TASVTNTYSIRIAFGKTMFLTNRSLCCSSNSHHIRPGILTSEESIFEVDFSIATSECWLS 155
           +ASV  T +   +    +   + SL  SSNS  ++   L S  +   V  + A+S   ++
Sbjct: 241 SASVQKTLTTSASTSLAVAQPHTSLATSSNSQALKTETLNSSSASPAVSTASASSSQLVA 300

Query: 154 KTVASLGNANTNTST 110
              +S   A+  TST
Sbjct: 301 SNSSSSSQASPATST 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,300,575
Number of Sequences: 59808
Number of extensions: 232308
Number of successful extensions: 703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)