Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20658
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase prot...    31   0.44 
Z78064-5|CAB01511.1|  473|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z11115-2|CAA77450.1|  599|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U40801-6|AAO91729.1|  450|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr...    27   5.4  
CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical ...    26   9.4  

>U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase protein
           4 protein.
          Length = 751

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
 Frame = +2

Query: 215 C*DSWADMVRVRRTTETAICQ-----EHCLPKGYSYGICVSNTCSC 337
           C   W  M   R+ T    C       HC P+ Y+YG CV    SC
Sbjct: 574 CCAVWGLMGECRKNTRYMACNCRVSCGHCYPEDYNYGSCVDYHRSC 619


>Z78064-5|CAB01511.1|  473|Caenorhabditis elegans Hypothetical
           protein F57B1.2 protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 213 DVKIPGRIWCEFEEQQRLRF-VRNIVFPKAILMEYV 317
           DV  PG  WC ++++  L   +   V PK++  ++V
Sbjct: 318 DVLSPGEAWCTYDKRATLTVKLARFVIPKSVSYQHV 353


>Z11115-2|CAA77450.1|  599|Caenorhabditis elegans Hypothetical
           protein ZK637.3 protein.
          Length = 599

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 206 FLRC*DSWADMVRVRRTTETAICQEHCLPKGYSYGICVSNTCSC 337
           F+ C D   D   ++    T +C + C PK    G  +S T +C
Sbjct: 414 FIYCPDK-GDTTFLKVQVFTGVCSDRCNPKSNEIGSSISMTGAC 456


>U40801-6|AAO91729.1|  450|Caenorhabditis elegans Hypothetical
           protein F28E10.1d protein.
          Length = 450

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 220 LTSEESIFEVDFSIATSECWLSKTVASLGNANTNTSTV 107
           L   ESI  +D S+  +E   S   A+  NAN NT  +
Sbjct: 341 LKMNESIISIDRSLPQNESRSSNHAAAQNNANRNTQYI 378


>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical protein
            F28E10.1a protein.
          Length = 1134

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 220  LTSEESIFEVDFSIATSECWLSKTVASLGNANTNTSTV 107
            L   ESI  +D S+  +E   S   A+  NAN NT  +
Sbjct: 1025 LKMNESIISIDRSLPQNESRSSNHAAAQNNANRNTQYI 1062


>CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical
           protein C42C1.7 protein.
          Length = 710

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +3

Query: 219 KIPGRIWCEFEEQ 257
           + PG++WC++EE+
Sbjct: 471 RTPGKVWCDYEEK 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,345,330
Number of Sequences: 27780
Number of extensions: 184096
Number of successful extensions: 478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)