Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20658
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    25   0.45 
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   1.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   2.4  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   3.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.3  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               20   9.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   9.6  

>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 24.6 bits (51), Expect = 0.45
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = +2

Query: 233 DMVRVRRTTETAICQEHCLPKGYSYGICVSNTCSC 337
           D++  +     + C  +CL  G + G C    C C
Sbjct: 47  DLLSFKGQVNDSACAANCLSLGKAGGHCEKGVCIC 81


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = +2

Query: 233 DMVRVRRTTETAICQEHCLPKGYSYGICVSNTCSC 337
           D++  +     + C  +CL  G + G C    C C
Sbjct: 47  DLLSFKGQVNDSACAANCLSLGKAGGHCEKVGCIC 81


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +2

Query: 8   LNEQVSVFLVCL*QSEQRNNGASTEKFGYFYISHGARV 121
           + +Q+   +  + QS+QR+  A+   +G+    HG  +
Sbjct: 778 VQQQMQAAMAAVQQSQQRHQHAAQMIYGHQQSHHGLHI 815


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/35 (22%), Positives = 14/35 (40%)
 Frame = +2

Query: 233 DMVRVRRTTETAICQEHCLPKGYSYGICVSNTCSC 337
           D++  +     + C  +C   G + G C    C C
Sbjct: 22  DLLSFKGQVNDSACAANCHSLGKAGGHCEKGVCIC 56


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 11/54 (20%), Positives = 24/54 (44%)
 Frame = -3

Query: 326 CY*HIFHKNSLWEDNVPDKSQSLLFFELAPYPPRNLNI*GIYFRSRLFDCHLRV 165
           C   +  +N L   N+ D++    +  L PY P N  +   +  + +F   +++
Sbjct: 317 CTASVMDENGLQFFNLIDQNAVGCWNSLLPYSPENQAVVARHDEAMIFPADVKI 370


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 157 SKTVASLGNANTNTSTVRN 101
           + +  + GNANTN S   N
Sbjct: 224 NNSTITAGNANTNASNNNN 242


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 314 IFHKNSLWEDNVPDKSQ 264
           +FH+ +L  DNV D S+
Sbjct: 60  LFHRLALMNDNVFDVSK 76


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 180  LPPQSVGCQR 151
            LPPQ V CQ+
Sbjct: 1114 LPPQVVSCQQ 1123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,067
Number of Sequences: 438
Number of extensions: 2236
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)