Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20658
         (415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47520.1 68418.m05867 Ras-related GTP-binding protein, putati...    28   2.2  
At3g21000.1 68416.m02655 expressed protein ; expression supporte...    28   2.2  
At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containi...    28   2.9  
At3g63340.1 68416.m07127 protein phosphatase 2C-related / PP2C-r...    27   5.0  
At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi...    26   8.7  
At4g18450.1 68417.m02737 ethylene-responsive factor, putative si...    26   8.7  
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si...    26   8.7  

>At5g47520.1 68418.m05867 Ras-related GTP-binding protein, putative
           similar to GTP-binding protein RAB11J GI:1370160 from
           [Lotus japonicus]
          Length = 221

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 153 FDNQHSEVAIEKSTSKIDSSDVKIPGRIWCEFEEQQRLRFVRNIVFPKAI 302
           + N  S + +E  T K+D +  +I  +IW +   Q+R R V +  +  A+
Sbjct: 40  YPNSKSTIGVEFQTQKMDINGKEIKAQIW-DTAGQERFRAVTSAYYRGAV 88


>At3g21000.1 68416.m02655 expressed protein ; expression supported
           by MPSS
          Length = 405

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 57  CSLCYKQTRNTETCSFK 7
           C LCYK   N E C F+
Sbjct: 230 CGLCYKNNHNQEDCKFR 246


>At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 768

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 195 SKIDSSDVK-IPGRIWCEFEEQQRLRFVRNIVFPK 296
           S +   DVK IPG+ W E E++  + F  +I  P+
Sbjct: 700 SSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPE 734


>At3g63340.1 68416.m07127 protein phosphatase 2C-related /
           PP2C-related protein phosphatase 2C - Rattus norvegicus,
           EMBL:AF095927
          Length = 528

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 14  EQVSVFLVCL*QSEQRNNGASTEKFGYFYISHG 112
           E+    LV L +  +RN G+S  +F  F + HG
Sbjct: 267 EEARATLVKLYRERRRNRGSSPSRFSDFKLEHG 299


>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 939

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -1

Query: 262 LCCSSNSHHIRPGILTSEESIFEVDFSIATSECWLSKTVASL 137
           LCC S S   R       +   E D  + T EC  S +V  +
Sbjct: 144 LCCGSRSRKCRNPKCKGMKKAMEFDLQLQTEECVKSGSVKEI 185


>At4g18450.1 68417.m02737 ethylene-responsive factor, putative
           similar to ethylene response factor 1 GB:AAD03544
           GI:4128208 from [Arabidopsis thaliana]; EREBP-1
           (Ethylene-inducible DNA binding protein that interact
           with an ethylene-responsive element) - Nicotiana
           tabacum, PATCHX:D1007899
          Length = 303

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 185 KVYFENRFLR-C*DSWADMVRVRRTTETAICQE 280
           K + E R LR   ++W D+ + RR+ E ++CQE
Sbjct: 234 KEHSETRGLRGSEETWFDLRKRRRSNEDSMCQE 266


>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
           similar to SP|O94761 ATP-dependent DNA helicase Q4
           (RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 911

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -1

Query: 304 RIAFGKTMFLTNRSLCCSSNSHHIRPGILTSEESIFEVDFSIATSECWLSKTVAS 140
           R++   ++ + + + C S  SH+ RP  +  + S+    FS   +EC L+ T  +
Sbjct: 379 RMSLSVSLVVVDEAHCVSEWSHNFRPSYMRLKASML---FSELKAECILAMTATA 430


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,583,644
Number of Sequences: 28952
Number of extensions: 162955
Number of successful extensions: 387
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)