Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20657
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.1  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   4.3  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    24   9.8  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   9.8  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 154 GGITYGPETFPGSPGQVGEQPGG 86
           GG   GP  F G PG  G  PGG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGG 246



 Score = 26.2 bits (55), Expect = 2.4
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -3

Query: 154 GGITYGPETFPGSPGQVGEQPGGVAFPNSGPSASGRDP 41
           GG   GP  F G PG  G   GG+     GP   G  P
Sbjct: 231 GGFEGGPGGFGGGPGGFG---GGLGGFGGGPGGFGGGP 265


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 283 ICLEMSWYVPLTFLSFC 233
           IC E +W  PL FL +C
Sbjct: 103 ICNEKAWTQPLVFLYYC 119


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 172 RLFF*EGGITYGPETFPGSPGQVGEQPGG 86
           RLF+  G    GPE+    PG V  + GG
Sbjct: 373 RLFWKNGLFVVGPESAGAHPGPVCYRKGG 401


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = +3

Query: 51  PEALGPLLGNATPP-GCSPTCPGEPGKVSG 137
           P   GP LG  TPP G  PT        SG
Sbjct: 260 PRVFGPTLGYNTPPFGYPPTTSSALPNASG 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,677
Number of Sequences: 5004
Number of extensions: 32775
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)