Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20657
         (462 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0100 + 20860850-20861055,20861082-20861203,20861412-20861563     29   1.4  
10_06_0048 - 10058385-10058639                                         29   1.8  
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150...    29   1.8  
12_02_1162 + 26612571-26613986,26614095-26614142                       27   7.3  
10_08_0862 - 21143540-21143968                                         27   7.3  
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704...    27   9.7  
06_02_0225 + 13257655-13260693                                         27   9.7  
03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049           27   9.7  
02_02_0240 + 8196140-8198248,8198381-8198650                           27   9.7  

>09_06_0100 + 20860850-20861055,20861082-20861203,20861412-20861563
          Length = 159

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 30  AWSRGSLPEALGPLLGNATPPGCSPTCPGEPG 125
           A +RG   E  G LL +A  P CS  CP   G
Sbjct: 29  AAARGGNAEVFGLLLDHAMSPTCSTNCPNGEG 60


>10_06_0048 - 10058385-10058639
          Length = 84

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 57  ALGPLLGNATPPGCSPTCPGEPGKVSGP*VIP 152
           AL  LL      GC+P CPGE    + P  +P
Sbjct: 11  ALSLLLFAVVAHGCTPNCPGEQAVPATPVAVP 42


>01_05_0564 +
           23312419-23312987,23314652-23314751,23314832-23315055,
           23315212-23316041,23316161-23316275,23316786-23316905,
           23317410-23317450,23317546-23317595,23317684-23317719,
           23317836-23317856
          Length = 701

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
 Frame = -3

Query: 151 GITYGPETFPGSPG-----QVGEQ-PGGVAFPNSGPSASG 50
           G+  G + FPG+P      Q G Q PGGV  P  G +  G
Sbjct: 558 GLAQGEQNFPGTPALLPVMQFGSQHPGGVGVPTVGMALPG 597


>12_02_1162 + 26612571-26613986,26614095-26614142
          Length = 487

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 139 GPETFPGSPGQVGEQPGGVAFPNSGPSASGRDPRLQ 32
           GPET      Q G+ P    +     S SG DP++Q
Sbjct: 38  GPETHTTESAQDGQDPPAGVYSYGYFSGSGNDPQVQ 73


>10_08_0862 - 21143540-21143968
          Length = 142

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 57  ALGPLLGNATPPGCSPTCP-GEPGKVSGP*VIPPS 158
           AL  LL  A   GC+P CP G P  +  P V+ P+
Sbjct: 11  ALTILLFAAAAHGCAPYCPGGAPPVIPTPPVVVPT 45


>12_02_0118 -
           13869237-13869307,13869375-13869465,13870321-13870440,
           13870668-13870795,13871159-13871270,13871719-13871817,
           13871918-13871992,13872099-13872320,13873177-13874034
          Length = 591

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
 Frame = -3

Query: 148 ITYGPETFPGSPGQVGEQP---GGVAFPNSGPSASGRDPRLQAAS*MLP 11
           ++ GP  F G P  V  QP   GG     + P   GR P   AA    P
Sbjct: 144 MSQGPLPFGGPPAAVASQPPPFGGPPVAAAQPPPFGRPPSAAAAGQSAP 192


>06_02_0225 + 13257655-13260693
          Length = 1012

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -3

Query: 145 TYGPETFPGSPGQVGEQPGGVAFPNSGPSASGRDPRLQAAS 23
           TYG    P  P Q  E   G     SG  + G D  LQA S
Sbjct: 587 TYGQTKVPIDPRQGSEAMPGAGGGRSGGGSVGGDHELQALS 627


>03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049
          Length = 319

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -1

Query: 138 ARRPFQVHRD--RW---ASSQEGWHFLTAARAPPEETH 40
           +RR F+  ++  RW    SS+E W ++ + + PP   H
Sbjct: 240 SRRMFEARKNVSRWWNNISSRESWEYVKSLQRPPSAAH 277


>02_02_0240 + 8196140-8198248,8198381-8198650
          Length = 792

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 48  LPEALGPLLGNATPP--GCSPTCPGEPGKVSGP 140
           +P ++GP+  N  PP  G +P  PG P   S P
Sbjct: 608 MPGSMGPMPTNIPPPPPGQNPYMPGPPRPYSMP 640


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,783,502
Number of Sequences: 37544
Number of extensions: 216303
Number of successful extensions: 787
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)