Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20657
(462 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 29 1.9
SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10) 29 2.5
SB_23055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25) 27 7.6
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 27 7.6
SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7) 27 10.0
SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 27 10.0
SB_26480| Best HMM Match : EGF (HMM E-Value=0) 27 10.0
SB_355| Best HMM Match : zf-UBR1 (HMM E-Value=2e-20) 27 10.0
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 51 PEALGPLLGNATPPGCSPTCPGEPGKVSGP*VIPPS*KNN 170
P G L PPG P P PG + P PP+ NN
Sbjct: 181 PAPPGVLAPPPAPPGVLPPPPAPPGALIPPPPAPPTFNNN 220
>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
Length = 559
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 154 GGITYG-PETFPGSPGQVGEQPGGVAFPNSGPSASG 50
GG+ G P FPG+ G G PG P P A G
Sbjct: 184 GGMPGGMPGGFPGAGGMPGGFPGAGGMPGGFPGAGG 219
>SB_23055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 63 GPLLGNATPPGCSPTCPGEPGKVSGP 140
GP+ G PPG +P PG+PGK P
Sbjct: 197 GPM-GPIGPPG-TPGVPGQPGKAGSP 220
>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1675
Score = 27.5 bits (58), Expect = 5.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 300 LPCFHSILHFFLLTMY*ILVNCFCKK 377
LPCF ++ F L + +++ CFC++
Sbjct: 234 LPCFSVVVAFLLSPLRVLVLPCFCRR 259
>SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25)
Length = 311
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -3
Query: 139 GPETFPGSPGQVGEQ-PGGVAFPNSGPSASG 50
GPE PGSPG GE GV P P G
Sbjct: 97 GPEGDPGSPGGSGEAGDKGVDGPPGSPGPQG 127
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 145 TYGPETFPGSPGQVGEQPGGVAFPNSGPSASGRDP 41
TY P G P Q G+QPG A P G + P
Sbjct: 777 TYNPSP-QGDPNQGGQQPGYGAPPTQGGPPQAQPP 810
>SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -3
Query: 154 GGITYGPETFPGSPGQVGEQPGGVAFPNSGPSAS 53
G + GP PG PG G PGGV +SGP S
Sbjct: 206 GAVIAGPPGPPGPPGPPG-PPGGVY--SSGPQNS 236
>SB_17493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 718
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 72 LGNATPPGCSPTCPGEPGKVSGP 140
+G TPPG P+ G P SGP
Sbjct: 280 IGGVTPPGMYPSGIGSPSIGSGP 302
>SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 139 GPETFPGSPGQVGEQPG--GVAFPNSGPSASGRD 44
GP PG+PG GE PG G+A P P G D
Sbjct: 82 GPPGPPGAPGPPGE-PGQVGMAGPPGPPGHVGED 114
>SB_38369| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)
Length = 412
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 51 PEALGPLLGNATPPGCSPTCPGE 119
P L PL + PPG +P PG+
Sbjct: 199 PSGLTPLTASQMPPGQTPMLPGQ 221
>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 858
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 151 GITYGPETFPGSPGQVGEQPGGVAFPNSGPSASGRD 44
G T G E PG+P Q +PGG P P +G +
Sbjct: 302 GQTQGEEAVPGTPLQ---KPGGPLAPAESPPKTGTE 334
>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
Length = 1772
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 36 SRGSLPEALGPLLGNATPPGCSPTCPGEPG 125
S S+P+ L + TP GC+ C E G
Sbjct: 1405 SNTSIPQFNDKTLSSTTPQGCASACDRETG 1434
>SB_355| Best HMM Match : zf-UBR1 (HMM E-Value=2e-20)
Length = 949
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 153 EGLLMARRPFQVHRDRWASSQEGWHFLTAARAPPEE 46
+GLL + PF H+ W+S FL A PEE
Sbjct: 34 DGLLKLQEPFDKHKKEWSS------FLIAGGKTPEE 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,146,487
Number of Sequences: 59808
Number of extensions: 237709
Number of successful extensions: 775
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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