Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20657
         (462 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070581-1|AAL48052.1|  422|Drosophila melanogaster RE66124p pro...    29   2.3  
AE014297-3765|AAN14044.1|  422|Drosophila melanogaster CG31300-P...    29   2.3  
AE014134-759|AAF50995.3| 1118|Drosophila melanogaster CG15635-PA...    29   2.3  
AY118865-1|AAM50725.1|  198|Drosophila melanogaster GM24986p pro...    27   9.3  
AE014298-2009|AAF48350.1|  198|Drosophila melanogaster CG11590-P...    27   9.3  

>AY070581-1|AAL48052.1|  422|Drosophila melanogaster RE66124p
           protein.
          Length = 422

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 226 IVYKNLKRLEAHTRTFLNKFQLSQSCPVFI 315
           +++KN K   AH  T L  FQ+S  CP+ I
Sbjct: 273 MMFKNNKGTGAHEDTMLVDFQISNLCPITI 302


>AE014297-3765|AAN14044.1|  422|Drosophila melanogaster CG31300-PA
           protein.
          Length = 422

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 226 IVYKNLKRLEAHTRTFLNKFQLSQSCPVFI 315
           +++KN K   AH  T L  FQ+S  CP+ I
Sbjct: 273 MMFKNNKGTGAHEDTMLVDFQISNLCPITI 302


>AE014134-759|AAF50995.3| 1118|Drosophila melanogaster CG15635-PA
           protein.
          Length = 1118

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 121 GSPGQVGEQPGGVAFPNSG--PSASGRDP 41
           GSP Q+G  PG    PNSG  P ++G  P
Sbjct: 737 GSPNQIGHPPGSQKPPNSGIYPPSTGSIP 765



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 121  GSPGQVGEQPGGVAFPNSG--PSASGRDP 41
            GSP Q+G  PG    PNSG  P ++G  P
Sbjct: 973  GSPNQIGHPPGSQKPPNSGIYPPSTGSIP 1001



 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 121 GSPGQVGEQPGGVAFPNSG--PSASGRDP 41
           GSP Q+G  PG    PNSG  P ++G  P
Sbjct: 796 GSPNQIGHPPGSQKPPNSGIYPPSTGWIP 824



 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 121 GSPGQVGEQPGGVAFPNSG--PSASGRDP 41
           GSP Q+G+ PG +  PN G  P ++G  P
Sbjct: 442 GSPNQIGQPPGSLLPPNVGIYPPSTGWIP 470



 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 121 GSPGQVGEQPGGVAFPNSG--PSASGRDPRLQ 32
           GSP Q+G  PG    PN G  P ++G  P L+
Sbjct: 855 GSPNQIGHPPGSQKPPNVGIYPPSTGSIPPLR 886


>AY118865-1|AAM50725.1|  198|Drosophila melanogaster GM24986p
           protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 326 VKYRMKTGQLWLNWNLFRNVLVCAS 252
           ++YR+    L L W+L RN+L+ AS
Sbjct: 1   MQYRISASCLPLRWSLVRNLLIAAS 25


>AE014298-2009|AAF48350.1|  198|Drosophila melanogaster CG11590-PA
           protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 326 VKYRMKTGQLWLNWNLFRNVLVCAS 252
           ++YR+    L L W+L RN+L+ AS
Sbjct: 1   MQYRISASCLPLRWSLVRNLLIAAS 25


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,373,166
Number of Sequences: 53049
Number of extensions: 358958
Number of successful extensions: 1964
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1960
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1539014778
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)