Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20657
         (462 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   2.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   2.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   2.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   4.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.5  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 66  PLLGNATPPGCSPTC 110
           PL GN  PPG   TC
Sbjct: 360 PLHGNLLPPGVCYTC 374


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 460 YSRLYCHSQVHSRVV 416
           Y RLYC++Q H + +
Sbjct: 212 YCRLYCYAQKHVKSI 226


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 223 MLLLIENIAILPIA 182
           +LLL+ N+ ILP+A
Sbjct: 96  LLLLVANLIILPVA 109


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 223 MLLLIENIAILPIA 182
           +LLL+ N+ ILP+A
Sbjct: 96  LLLLVANLIILPVA 109


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 223 MLLLIENIAILPIA 182
           +LLL+ N+ ILP+A
Sbjct: 96  LLLLVANLIILPVA 109


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = -3

Query: 451 LYCHSQVHSRVVNVHFGG 398
           ++C+ + H R++++  GG
Sbjct: 219 VWCNEEDHLRIISMQMGG 236


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 97  QPGGVAFPNSGPSASGR 47
           Q  GVA P SG  ASG+
Sbjct: 912 QVQGVAVPGSGIVASGQ 928


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,770
Number of Sequences: 438
Number of extensions: 2718
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)