Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20657
(462 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 33 0.094
At5g26800.1 68418.m03197 expressed protein predicted protein, Ar... 29 2.0
At5g15050.1 68418.m01764 glycosyltransferase family 14 protein /... 29 2.0
At5g24930.1 68418.m02952 zinc finger (B-box type) family protein... 27 4.7
At1g70990.1 68414.m08190 proline-rich family protein 27 6.2
At5g09230.6 68418.m01054 transcriptional regulator Sir2 family p... 27 8.2
At5g09230.5 68418.m01052 transcriptional regulator Sir2 family p... 27 8.2
At5g09230.4 68418.m01053 transcriptional regulator Sir2 family p... 27 8.2
At5g09230.3 68418.m01049 transcriptional regulator Sir2 family p... 27 8.2
At5g09230.2 68418.m01051 transcriptional regulator Sir2 family p... 27 8.2
At5g09230.1 68418.m01050 transcriptional regulator Sir2 family p... 27 8.2
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ... 27 8.2
At2g15340.1 68415.m01754 glycine-rich protein 27 8.2
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 33.1 bits (72), Expect = 0.094
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -3
Query: 154 GGITYGPETFPGSPGQVGEQPGGVAFPNSGPSASGRDPR 38
GG +GP PG G PGG F GP GR PR
Sbjct: 22 GGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFGGRGPR 60
Score = 30.7 bits (66), Expect = 0.50
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = -3
Query: 163 F*EGGITYGPETFPGSPGQVGEQPGGVAFPNSGPSASGRDPR 38
F GG +GP PG G PGG F GP G PR
Sbjct: 26 FGPGGPGFGPGGPGFGPGGPGFGPGGPGFGGRGPRGPGFGPR 67
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -3
Query: 139 GPETFPGSPGQVGEQPGGVAFPNSGPSA-SG-RDPR 38
GP PG PG G P G F GP SG R PR
Sbjct: 44 GPGFGPGGPGFGGRGPRGPGFGPRGPGPWSGPRGPR 79
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 151 GITYGPETFPGS-PGQVGEQPGGVAFPNSGPSASGRDPR 38
G +GP PG G G +PGG P GP + R PR
Sbjct: 61 GPGFGPRG-PGPWSGPRGPRPGGGGGPGPGPWSGPRGPR 98
>At5g26800.1 68418.m03197 expressed protein predicted protein,
Arabidopsis thaliana
Length = 128
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 300 LPCFHSILHFFLLT---MY*ILVNCFCKKNNQFFC 395
+PC H HF LLT + + VN FC++ + + C
Sbjct: 69 IPCKHVCSHFLLLTTIYFFHVAVNRFCEQYHVWVC 103
>At5g15050.1 68418.m01764 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 434
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 277 LEMSWYVPLTFLSFCTLFMLLL 212
L+ W +PL S C+LF+LLL
Sbjct: 18 LDRKWILPLAIGSICSLFLLLL 39
>At5g24930.1 68418.m02952 zinc finger (B-box type) family protein
similar to CONSTANS-like protein 1 GI:4091804 from
[Malus x domestica]
Length = 406
Score = 27.5 bits (58), Expect = 4.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = -3
Query: 154 GGITYGPETFPGSPGQVGEQPGG-----VAFPNSGPSASGRDPRLQAA 26
GG + S +VG P G V++P GP+ SG DP Q A
Sbjct: 284 GGYNCISHSVSSSSMEVGVVPDGGSVADVSYPYGGPATSGADPGTQRA 331
>At1g70990.1 68414.m08190 proline-rich family protein
Length = 176
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 66 PLLGNATPPGCSPTCPGEPGKVSGP*VIPPS 158
P L N PP P P P + P +PPS
Sbjct: 86 PCLQNIPPPSPPPPSPPPPSQACPPPPLPPS 116
>At5g09230.6 68418.m01054 transcriptional regulator Sir2 family
protein contains Pfam domain PF02146: transcriptional
regulator, Sir2 family;
Length = 271
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 132 RPFQVHRDRWASSQEGWHFLTAARAPPEET 43
R + R WA S GW TAA+ P T
Sbjct: 31 RSSRARRRYWARSYAGWRRFTAAQPGPAHT 60
>At5g09230.5 68418.m01052 transcriptional regulator Sir2 family
protein contains Pfam domain PF02146: transcriptional
regulator, Sir2 family;
Length = 354
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 132 RPFQVHRDRWASSQEGWHFLTAARAPPEET 43
R + R WA S GW TAA+ P T
Sbjct: 114 RSSRARRRYWARSYAGWRRFTAAQPGPAHT 143
>At5g09230.4 68418.m01053 transcriptional regulator Sir2 family
protein contains Pfam domain PF02146: transcriptional
regulator, Sir2 family;
Length = 271
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 132 RPFQVHRDRWASSQEGWHFLTAARAPPEET 43
R + R WA S GW TAA+ P T
Sbjct: 31 RSSRARRRYWARSYAGWRRFTAAQPGPAHT 60
>At5g09230.3 68418.m01049 transcriptional regulator Sir2 family
protein contains Pfam domain PF02146: transcriptional
regulator, Sir2 family;
Length = 324
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 132 RPFQVHRDRWASSQEGWHFLTAARAPPEET 43
R + R WA S GW TAA+ P T
Sbjct: 133 RSSRARRRYWARSYAGWRRFTAAQPGPAHT 162
>At5g09230.2 68418.m01051 transcriptional regulator Sir2 family
protein contains Pfam domain PF02146: transcriptional
regulator, Sir2 family;
Length = 373
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 132 RPFQVHRDRWASSQEGWHFLTAARAPPEET 43
R + R WA S GW TAA+ P T
Sbjct: 133 RSSRARRRYWARSYAGWRRFTAAQPGPAHT 162
>At5g09230.1 68418.m01050 transcriptional regulator Sir2 family
protein contains Pfam domain PF02146: transcriptional
regulator, Sir2 family;
Length = 373
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 132 RPFQVHRDRWASSQEGWHFLTAARAPPEET 43
R + R WA S GW TAA+ P T
Sbjct: 133 RSSRARRRYWARSYAGWRRFTAAQPGPAHT 162
>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
similar to potato PCP1 zinc finger protein, GenBank
accession number X82328 contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 402
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 115 PGQVGEQPGGVAFPNSGPSASGRDPRLQAA 26
PG + E GGVAFP S D Q A
Sbjct: 361 PGDMLEYAGGVAFPMSAYDTESHDHSFQKA 390
>At2g15340.1 68415.m01754 glycine-rich protein
Length = 119
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 145 TYGPETFPGSPGQVGEQPGGVAFPNSGPSAS 53
T GP + PG G PGG PNSG +S
Sbjct: 49 TSGPGSTPGDSNSGGSNPGG---PNSGGFSS 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,431,720
Number of Sequences: 28952
Number of extensions: 171742
Number of successful extensions: 498
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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