Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20656
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.5
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.4
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 27 3.4
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 3.4
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 5.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 7.8
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 7.8
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 7.8
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 7.8
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 7.8
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 7.8
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 7.8
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 7.8
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +1
Query: 37 SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 216
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 217 TEKTQKSLFDGI 252
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 221 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 90
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 537 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLRRPLQVL 677
HKG + +E+++ Y+ VTRK I + P + + SQ I+ PL ++
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263
>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 168
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 212 SPLRRPRSLYSTVSKV*FEPAEAHRDSGEEPASGQRRCRSGESPPEPLGR 361
S L P+S +S + P+ A + + Q+R R+ E P E R
Sbjct: 117 STLSTPKSFHSPLQSRGISPSSAQSSAAVSSSRKQKRKRTSEGPSERRAR 166
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 228 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 124
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 389 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 484
++HD G S + DR + K++ +HRE
Sbjct: 720 QSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 416 ILFFRRRVLHLSLVEVFNSVQEVL 345
I++ + + LHL LV +FN E++
Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 230 WVFSVATSSADGSTIFSLVSTSRRQL 153
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 230 WVFSVATSSADGSTIFSLVSTSRRQL 153
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 230 WVFSVATSSADGSTIFSLVSTSRRQL 153
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 476 HRELRSH*AEATETCEKNSLPQRTSLSKRNQ 568
HR RS EATE + NS + L K+ Q
Sbjct: 497 HRVTRSEMEEATEILKNNSADLKAQLEKQPQ 527
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 230 WVFSVATSSADGSTIFSLVSTSRRQL 153
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 233 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 135
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,257
Number of Sequences: 5004
Number of extensions: 54873
Number of successful extensions: 226
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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