Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20656
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 63 2e-10
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 36 0.031
SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4) 32 0.39
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 32 0.39
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 31 0.67
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05) 31 0.89
SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 25 1.5
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 30 1.6
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 2.1
SB_3437| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6) 29 2.7
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087) 29 2.7
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 29 3.6
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05) 29 4.8
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9) 29 4.8
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 29 4.8
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 28 6.3
SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6) 28 6.3
SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1) 28 6.3
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 28 6.3
SB_52306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_9325| Best HMM Match : Exo_endo_phos (HMM E-Value=0.081) 28 8.3
SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3) 28 8.3
SB_15442| Best HMM Match : rve (HMM E-Value=0.00084) 28 8.3
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +3
Query: 228 PEVF--IRRYRKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTT 401
PEV + FD+S+LKH E QEKNPLP KD + E V+ FD +++KH
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTESTETRA--EVKTFDHSKLKHVQ 731
Query: 402 TEEKNPL 422
TEEKNPL
Sbjct: 732 TEEKNPL 738
Score = 60.9 bits (141), Expect = 1e-09
Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Frame = +3
Query: 228 PEVFIRRYR--KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTT 401
PEV R KFD+S+LKH ET+EK +P KDV+ AE V+ FD +++KH
Sbjct: 522 PEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVV 579
Query: 402 TEEKNPL-XXXXXXXXXXXXNK-FLNGIENFDPTKLK 506
T+EKNPL NK + + +FD TKLK
Sbjct: 580 TQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLK 616
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/57 (50%), Positives = 37/57 (64%)
Frame = +3
Query: 252 RKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPL 422
+ F+ S+L+H ET+EKN LP KD +A EK GVE F K ++KH T EKNPL
Sbjct: 455 KSFEKSKLQHVETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNPL 510
Score = 56.8 bits (131), Expect = 2e-08
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +3
Query: 252 RKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPLX 425
+ FD S+LKH ET EKNPLP V+ E + L D V FD +++KH +EKNPL
Sbjct: 644 KSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLP 703
Query: 426 XXXXXXXXXXXNKFLNGIENFDPTKLK 506
+ ++ FD +KLK
Sbjct: 704 TKDDITTESTETR--AEVKTFDHSKLK 728
Score = 54.8 bits (126), Expect = 6e-08
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +3
Query: 252 RKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVE--HFDKTQMKHTTTEEKNPLX 425
+ FD S+LKH TQEKNPLP + E +N D E FD T++KH TT+EK+ +
Sbjct: 568 KSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMP 627
Query: 426 XXXXXXXXXXXNKFLNGIENFDPTKLK 506
++ +++FD +KLK
Sbjct: 628 SQEDIKEEAVDSR--AEVKSFDHSKLK 652
Score = 54.4 bits (125), Expect = 8e-08
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPLXX 428
KFD++ LKH +T+EKN LP + + E D V+ F+K++++H T+EKN L
Sbjct: 416 KFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPT 475
Query: 429 XXXXXXXXXXNKFLNGIENFDPTKLK 506
F +G+E F KLK
Sbjct: 476 KDTIADEKRTAPF-SGVEVFQKNKLK 500
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +3
Query: 258 FDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPLXXX 431
F ++LKH ET EKNPLPD + AE + L D V FD +++KH T+EK +
Sbjct: 494 FQKNKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTK 553
Query: 432 XXXXXXXXXNKFLNGIENFDPTKLK 506
++ +++FD +KLK
Sbjct: 554 DVIEAEAIDSR--AEVKSFDHSKLK 576
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +3
Query: 258 FDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXX 437
FD ++LKH TQEK+ +P ++ + E V+ FD +++KH T EKNPL
Sbjct: 610 FDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPSAAV 667
Query: 438 XXXXXXXNKF--LNGIENFDPTKLK 506
++ + +FD +KLK
Sbjct: 668 LKEEMRPEVLPDVSAVASFDASKLK 692
Score = 44.8 bits (101), Expect = 7e-05
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 252 RKFDSSQLKHTETQEKNPLPDKDVVAAEKA 341
+ FD S+LKH +T+EKNPLPD +A EKA
Sbjct: 720 KTFDHSKLKHVQTEEKNPLPDAKTIAQEKA 749
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +1
Query: 103 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 222
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 103 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 222
+PK D +S++ F+ + L+ V T EK ++PS ED+ E
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 35.9 bits (79), Expect = 0.031
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 91 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFD 246
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S F+
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFE 385
>SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)
Length = 426
Score = 32.3 bits (70), Expect = 0.39
Identities = 26/93 (27%), Positives = 37/93 (39%)
Frame = +2
Query: 206 KTSPLRRPRSLYSTVSKV*FEPAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDS 385
++S RRPRS + + P+ RDS E S + + SPP S S
Sbjct: 32 RSSVDRRPRSSRESPERK--RPSSLGRDSSERRPSARVSSDNSRSPPHRRDSSRRSHSPS 89
Query: 386 DEAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 484
+ DD R R R +E+ P R R+
Sbjct: 90 RRSSDD-RSTDARDRRDRRRSSSRERRPPRDRD 121
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/96 (18%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +2
Query: 284 RDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 463
++ G+ + +++ R E P + L + ++ D+ + +E PD+ + +++
Sbjct: 829 QEQGKPDKNKEKQDREQEKPDKDLEKQYQKQEKPDKGQEKQDREQEKPDKDQEKQDREQE 888
Query: 464 IPERHRELRSH*AEATE-TCEKNSLPQRTSLSKRNQ 568
P++ +E + H E + EK Q + +R Q
Sbjct: 889 KPDKDQEKQDHEQEKPDKDQEKQDREQEKTDKEREQ 924
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 21 ESSIPFLIKNILIQNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 155
E S+PF N QN ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 31.5 bits (68), Expect = 0.67
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +2
Query: 413 ESTAPDRSYRSGEGKEQIPERHRE----LRSH*AEATETCEKNSLPQRTSLSKRNQLEPL 580
+STA D SY SG G E P HR +RS + T+ + S P +S +
Sbjct: 483 DSTASDSSYDSGSGPELSPNEHRSHAKAIRSR-SRGTDVYDGRSAPPVKMISGGATMRKR 541
Query: 581 LYNS 592
LY S
Sbjct: 542 LYAS 545
>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
Length = 385
Score = 31.1 bits (67), Expect = 0.89
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = -2
Query: 264 NQTFDTVE*RLLGLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGEVFQGGS 85
N F + + GLL+GD+F R K N+ I VD T G + FEL + + E+ GS
Sbjct: 62 NARFMDTDIQWAGLLAGDIFRRPKANILISVDGV-TKG-DKFELPAKASFPVQEMAGLGS 119
>SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -2
Query: 264 NQTFDTVE*RLLGLLSGDVFSRRKHNLFIGVDVTETAGVEAFEL 133
N F + + GLL+GD+F R K N+ I VD T G + FEL
Sbjct: 39 NARFMDTDIQWAGLLAGDIFRRPKANILISVDGV-TKG-DKFEL 80
>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
Length = 590
Score = 24.6 bits (51), Expect(2) = 1.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 380 DSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHREL 487
DSD+ +DD +STA R R + + P R L
Sbjct: 281 DSDDDYDDREGDSTAKIRKGRRSDTDDLSPNPRRLL 316
Score = 24.2 bits (50), Expect(2) = 1.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 263 FEPAEAHRDSGEE 301
FEP E H DSG+E
Sbjct: 266 FEPMEIHDDSGDE 278
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 285 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 395
+T E++P DK A +LLDG+ FD+ + +H
Sbjct: 261 KTIEQDPTSDKSYKALRDTTHDLLDGLRDFDQAKEEH 297
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 285 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 395
+T E++P +K A +LLDG++HF + + +H
Sbjct: 163 KTIEQDPSSEKSYQALRDTTHDLLDGLQHFGQAKEEH 199
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 73 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 219
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_3437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/121 (19%), Positives = 48/121 (39%)
Frame = +2
Query: 206 KTSPLRRPRSLYSTVSKV*FEPAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDS 385
KTS +PRS T +P + + + + + + + P ++ T RQD
Sbjct: 4 KTSRKTKPRSSRKT------KPRSSRKTKPRQAVKTKTKPQDQDQAVRPSRKTKTKRQDQ 57
Query: 386 DEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEATETCEKNSLPQRTSLSKRN 565
D+A D +++ R + + P R+ ++ + + + PQ S++
Sbjct: 58 DQAAKDQAARPRPSNKTKRQDQDQAARPRPSRKTKTKPQDQDQAARPSRKPQAARPSRKP 117
Query: 566 Q 568
Q
Sbjct: 118 Q 118
>SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6)
Length = 692
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 285 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 395
+T E++P +K A +LLDG+ +FD+ + +H
Sbjct: 537 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQAKEEH 573
>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 285 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 395
+T E++P +K A +LLDG+ +FD+ +H
Sbjct: 567 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 603
>SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)
Length = 556
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 285 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 395
+T E++P +K A +LLDG+ +FD+ +H
Sbjct: 492 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 528
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 222 EDPEVFIRRYRKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTT 401
E VF +R R + + + TET+E NP D AE+ ++ +G T+ K T
Sbjct: 274 EGKSVF-KRNRPTEPASVPSTETKEANPNVTADTKQAEQNEGSMSEGTTSKTITENKTTN 332
Query: 402 TE 407
E
Sbjct: 333 ME 334
>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = +2
Query: 161 SVTSTPMKRLCFRLLKTSPLRRPRSLY-----STVSKV*FEPAEAHRDSGEEPASGQRRC 325
SVT T +RL R S L PRS+ T+ ++ A R GEE G+ +C
Sbjct: 438 SVTGTFARRLVSRTTDASSLEDPRSVVVTSSPRTLGRISNGTTSARRVEGEEHVCGEYKC 497
>SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)
Length = 492
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 223 SQWRRLQQTEAQSFHWCRRHGDSWC*SLRADSSGLWRPW 107
S WRRLQ+ A S + + D +L A+ G W PW
Sbjct: 419 SLWRRLQELNATSLEYRLQPEDPRSIAL-AERLGRWEPW 456
>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
Length = 646
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -3
Query: 467 EFVLFLLRFDSFDRGQWILFFRRRVLHLSLVEVFNSVQEVL 345
+FVL++LRF +D I ++ + HL+LVE + +Q+ L
Sbjct: 295 DFVLYMLRFSDYD----IYTGKKSIAHLTLVEFESWLQDEL 331
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 591 VTRKCISLVSPYFNIDVSQIDL 656
+ KC L+SPY ++D+ DL
Sbjct: 13 IAAKCTQLISPYLDLDIKYFDL 34
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 94 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 222
L DL +V +LKS+ EG CL D++ + DV E
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKE 1166
>SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)
Length = 1130
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 249 YRKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMK 392
+RK+D +L+ E +++ P DV+A + A Q +H+D + K
Sbjct: 804 HRKYD--ELRAGEGRDREPSEVYDVIADDNATQRASAASDHYDVVEFK 849
>SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)
Length = 766
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 294 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 395
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 75 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 108
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 294 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 395
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 173 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 206
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 294 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 395
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 222 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 255
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 294 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 395
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 320 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 353
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 38 PHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTP 178
P + + E P P + L P T+ P+ V +ASTP S +P
Sbjct: 517 PRNSFAEYEKPLPTLPLSPTNTTTGRPRLSTVPPEASTPTDSFPKSP 563
>SB_52306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +2
Query: 269 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 448
P + HR S + +G+R G+ PE R ++ + E + T G
Sbjct: 75 PEKQHRGSVHKRGNGER----GQGSPEKQQRGSVHKRGNGEGKSSPENQHTGSIYKRGKG 130
Query: 449 EGKEQIPERHR 481
EGK +HR
Sbjct: 131 EGKSSPENQHR 141
>SB_9325| Best HMM Match : Exo_endo_phos (HMM E-Value=0.081)
Length = 249
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 203 LKTSPLRRPRSLYSTVSKV*FEPAEAHRDSGEE 301
L+ P+R PRS+ STV V + P A D ++
Sbjct: 129 LQLRPIRLPRSVSSTVLGVIYHPPHAKADDNQK 161
>SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3)
Length = 334
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +2
Query: 293 GEEPASGQRR----CRSGESPPEPLGRS*T-LRQDSDEAHDDGRK---ESTAPDRSYRSG 448
GEEP+S S + P P+ + + +D D+ +G + ES A DRS+ SG
Sbjct: 181 GEEPSSRTETPDLYILSNDIPTSPVDEAPLPVDEDDDDEQVNGLRMLPESVALDRSHESG 240
Query: 449 EGKEQIP 469
G +P
Sbjct: 241 RGTPHLP 247
>SB_15442| Best HMM Match : rve (HMM E-Value=0.00084)
Length = 822
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Frame = +3
Query: 210 RRH*EDPEVFIRRYRKFDSS---QLKHTETQEKNPLPDKD----VVAAEKAHQNLLDGVE 368
+ H DP FIR Y ++ + L+ + P KD +A EKA + ++DG
Sbjct: 690 KTHKSDPVAFIRGYHEYMTEWEPALEDVYKLMRQPTNIKDPNAVAIAREKADKTVMDGDV 749
Query: 369 HFDKTQMKHTTTEEK 413
+ +Q + T EK
Sbjct: 750 GYQISQEQRPTNCEK 764
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,878,479
Number of Sequences: 59808
Number of extensions: 440355
Number of successful extensions: 1632
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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