Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20656
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    53   2e-07
Z93383-3|CAB07625.1|  309|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ...    31   1.0  
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    29   2.4  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    29   4.2  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl cyc...    27   9.7  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 33/101 (32%), Positives = 46/101 (45%)
 Frame = +3

Query: 270 QLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXX 449
           +LK  ET EKN LP K+ VA EK H   +  +EHFD T++  T  +EK  L         
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82

Query: 450 XXXNKFLNGIENFDPTKLKQRKRARRTRSHKGRH*AREISL 572
               +  + I NF    LK+ +   +         ARE +L
Sbjct: 83  KQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTL 123



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 24/61 (39%), Positives = 31/61 (50%)
 Frame = +3

Query: 240 IRRYRKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNP 419
           I     FDS++L  T  +EK  LP  D +  EK H  L D + +F    +K T T EKN 
Sbjct: 51  IHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNV 110

Query: 420 L 422
           L
Sbjct: 111 L 111



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +1

Query: 133 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIES 258
           ++E F+++ L      EKIVLPSA+D+  EK    L D I +
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINN 94



 Score = 35.9 bits (79), Expect = 0.028
 Identities = 22/53 (41%), Positives = 25/53 (47%)
 Frame = +3

Query: 246 RYRKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 404
           +   F S  LK TET EKN LP    VA EK     L     FDK+ + H  T
Sbjct: 91  KINNFPSENLKKTETIEKNVLPSPTDVAREKT----LQMAASFDKSALHHVET 139



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 91  SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE 255
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK        IE
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIE 55



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 88  PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 228
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA EKT
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122


>Z93383-3|CAB07625.1|  309|Caenorhabditis elegans Hypothetical
           protein F54B8.3 protein.
          Length = 309

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
 Frame = -3

Query: 581 VVVQADFSCSMTSFVGASSS---RTFPLLQLSGIEVLDAVQEFVLFLLRFDSFDRGQWIL 411
           V   AD +C+  ++    +     TF ++ L+ ++V  A++    F    ++ DR Q I 
Sbjct: 74  VYTDADDNCTTVTYNDQENEIEGETFLVIALNDLKV--ALKHVSCFAYVDNTLDRYQNIT 131

Query: 410 FFRR-----RVLHLSLVEVFNSVQEVLVGFLRC 327
           +F+R       LH+  VE++NS  + ++  LRC
Sbjct: 132 YFKRFLKSEETLHVEEVEIWNSYVDDVMTILRC 164


>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
           protein Y53F4B.9 protein.
          Length = 1168

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
 Frame = +2

Query: 134 SSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSKV*FEPAEAHRDSGEEPA 307
           SS AS  A SVT T ++ +  + +  KT P  R +SL    +     PA+  +   EEP 
Sbjct: 251 SSIASYSAESVTETALESVNTKSVESKTRPSSRRKSLILGAASPLKSPAKIEKPRLEEPE 310

Query: 308 SGQRRCRS----GESPPEPLGRS*TLRQDSDEAHDDGRKESTAP 427
              +R R          EP  +S  L +D  E     ++E+  P
Sbjct: 311 QKSKRSRRSLRLNPDAIEPPVKSCDLLEDEREESSSKKRENHDP 354


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = +2

Query: 284 RDSGEEPASGQRRCRSGESPPEPLGRS*TLR-QDSDEAHDDGRKESTAPDRSYRSGEGKE 460
           +D   +    +R+ +   S  +  GR  +   +    + D  R    +P+RS RS E + 
Sbjct: 233 KDKNRKKEKTERKRKRSHSSSDRRGRRTSKESRRRSRSRDTHRTRRRSPERSRRSTETRN 292

Query: 461 QIPERHRELRSH*AEATETCEKNSLPQRTSLSK 559
           + PER    RS    + E  E +S  +R S S+
Sbjct: 293 ERPERPSRWRS---RSRERKEYDSYRRRRSRSR 322


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 275  EAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKE 415
            E   +  E+    +   R  E  PEPL R      D DE  DDG ++
Sbjct: 2493 EDEEEEAEDDDQDEDDVRHVEQNPEPLARRLFEEDDDDEEDDDGDED 2539


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 30/131 (22%), Positives = 50/131 (38%)
 Frame = +2

Query: 89  PP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYSTVSKV*FE 268
           P  + SP + ++   + +  +P+ S +  P +         +P RR RS  ++ S     
Sbjct: 302 PRRRRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPP-A 360

Query: 269 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 448
           P  A   S   PA  +R   + +SPP P       R+   ++     K    P R  RS 
Sbjct: 361 PKRAKSRSKSPPARRRRSPSASKSPPAP-----RRRRSPSKSRSPAPKREIPPARRRRSP 415

Query: 449 EGKEQIPERHR 481
              +  P   R
Sbjct: 416 SASKSPPAPKR 426


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 26  FYPLPHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 205
           F P+P    + +   +     P   TSP+SP +   S++   P VSVTS P ++      
Sbjct: 19  FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75

Query: 206 KTSPLRR 226
             +P+++
Sbjct: 76  TVTPIQQ 82


>AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl
           cyclase protein 19 protein.
          Length = 1143

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 608 DTFASNCYKVVVQADFSCSMTSFVGASSS 522
           +TF  NC  VVV    SC+  + + AS+S
Sbjct: 298 NTFTMNCGAVVVNPPVSCATPACINASTS 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,389,551
Number of Sequences: 27780
Number of extensions: 318737
Number of successful extensions: 1154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)