Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20656
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 31 0.73
At4g26630.1 68417.m03837 expressed protein 31 0.73
At2g29620.1 68415.m03598 expressed protein 30 1.7
At5g39580.1 68418.m04794 peroxidase, putative identical to perox... 29 3.9
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 29 3.9
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 29 3.9
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 28 5.1
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 28 5.1
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 28 6.8
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 27 9.0
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 31.1 bits (67), Expect = 0.73
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 296 EEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPE- 472
EE + + ES + G++ S + + + E + S GEGKE+ PE
Sbjct: 296 EEDEKEKVQSSEEESKVKESGKNEKDASSSQDESKEEKPERKKKEESSSQGEGKEEEPEK 355
Query: 473 RHRELRSH*AEATETCEKNSLPQRTSLSKRNQLE 574
R +E S E+ E +N + +S + N+++
Sbjct: 356 REKEDSSSQEESKEEEPENKEKEASSSQEENEIK 389
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 31.1 bits (67), Expect = 0.73
Identities = 25/103 (24%), Positives = 46/103 (44%)
Frame = +2
Query: 266 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS 445
E AE + EE +S + P+P + ++ DE+ + +E+T R R
Sbjct: 536 EKAEEKEEKKEEENENGIPDKSEDEAPQP-----SESEEKDESEEHSEEETTKKKRGSRL 590
Query: 446 GEGKEQIPERHRELRSH*AEATETCEKNSLPQRTSLSKRNQLE 574
GK++ R R ++ A + EK + Q+ S +KR + +
Sbjct: 591 SAGKKESAGRARNKKAVVAAKSSPPEK--ITQKRSSAKRKKTD 631
>At2g29620.1 68415.m03598 expressed protein
Length = 747
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 401 DGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEATETCEKNSLPQRTSLSKRN-QLEP 577
DG ES S S EG+++ ER ++ TE +KN + TS +RN +LE
Sbjct: 192 DGDDESEVECSSSSSSEGEKEEEERREDVSKVVVAWTEDDQKNLMDLGTSEIERNKRLEN 251
Query: 578 LLYNSYSQMY 607
L+ S+ +
Sbjct: 252 LISRRRSRRF 261
>At5g39580.1 68418.m04794 peroxidase, putative identical to
peroxidase ATP24a [Arabidopsis thaliana]
gi|1890313|emb|CAA72484
Length = 319
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 333 PLRQRLCPEAGSSPESRCASAGSNQTFDT 247
P QRLCP+ G GS TFDT
Sbjct: 220 PQLQRLCPQNGDGSARVDLDTGSGNTFDT 248
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = +1
Query: 4 RVAECTNLLSPSSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 183
R+A C P ++ F + S S + SL+D+ ++ +LK L+G + VDTN
Sbjct: 513 RIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN- 569
Query: 184 KIVLPSAEDVATEK 225
AED A E+
Sbjct: 570 ----LDAEDRAAER 579
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 73 SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 237
S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E S
Sbjct: 78 SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 225 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 106
++ G+ +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 104 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSKV*FEPAE 277
SP ++ R S++ P+ S +S R + ++ PL R RSLYS+VS+
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKS 252
Query: 278 AHRDSGEEPAS 310
R P S
Sbjct: 253 RSRSRSNSPVS 263
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
[Bos taurus]
Length = 897
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Frame = +2
Query: 287 DSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQI 466
+S ++ R R SP R SDE+ DD +++S++ ++ GK
Sbjct: 794 ESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGK--- 850
Query: 467 PERHRELRSH*AEATETCEKNSL--PQRTSLSKRNQ 568
R R + S + + KN+L S SKR++
Sbjct: 851 -SRRRHVSSRSPHSKHSQHKNTLYSSHDKSRSKRSR 885
>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
similarity to DNA polymerase kappa [Mus musculus]
GI:14279087; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 785
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 228 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 103
GL G++ + +++ +T +AGV A L +VC D+ +
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,624,273
Number of Sequences: 28952
Number of extensions: 303639
Number of successful extensions: 1053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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