Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20655
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   2.3  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   3.1  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    22   5.3  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 99  WNYEYMSRDFTNCN*RYKNKNSCCFLLNV 185
           W Y   +  + N N +Y   N CC  L++
Sbjct: 39  WYYLLTNLTYNNTNRKYYWLNVCCLNLSI 67


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 171 NSTSFYSYIFNCNS 130
           N T+F S+IFN NS
Sbjct: 258 NLTTFGSFIFNANS 271


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 98  VISMHLFTLCLMINRTLAPCGPV 30
           V+  HL  L +++N     CG V
Sbjct: 52  VVQKHLILLMVLVNLIFNTCGEV 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,924
Number of Sequences: 336
Number of extensions: 3369
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)