Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20655
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    28   1.4  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    28   1.4  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    28   1.4  
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...    27   1.9  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   1.9  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    26   4.4  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   5.8  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    26   5.8  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    26   5.8  
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.8  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   5.8  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   7.7  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   7.7  

>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 551 SWLSSVIGYGGIPWVF 598
           ++L+SVIGYG + W+F
Sbjct: 493 NFLTSVIGYGNVMWIF 508


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 467 SQGEINRPYSTTNEELLDKRHPRTLFNASI--ILTCTNFFVIRVHD 336
           S G++    S  ++ELLD R P T+  AS+  +  C N  V+ VH+
Sbjct: 243 SVGKVRVISSDFSKELLDLRLPETVAEASLKQMAWCGNDAVVLVHE 288


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 461 PGNGHRSTHGIHTSAQKEANSTEAVSEEMESWLSSVIGYGGIPWVF 598
           P     + HGI  +  K       ++  + ++L+S+IGYG + W+F
Sbjct: 478 PARVRGTAHGISAALGK---CGAILASLLFNFLTSIIGYGNVMWIF 520


>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 492 FIPQLRKRQTLQKQSRRKWSHGYHP 566
           FIP+ +++Q +QK+    W  GY P
Sbjct: 129 FIPERQRKQEMQKRRLDAWYFGYIP 153


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 10  VKFKGSSTGPHGANVRLIIKHNVNKCILITGITSTCQGISRIAIEDI 150
           V F+GS  G H  N R +   ++NK I + GI + C  +    I+ +
Sbjct: 104 VGFRGSF-GDHHVNPRTLRAMHLNKMISLEGIVTRCSFVRPKVIKSV 149


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 551 SWLSSVIGYGGIPWVF 598
           ++L+ VIGYG + W+F
Sbjct: 504 NFLTGVIGYGNVMWIF 519


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 500 SAQKEANSTEAVSEEMESWLSSVIGYGGIPW 592
           +AQK++N+T         W+S+V  Y G  W
Sbjct: 5   TAQKQSNATGLQRHVSGRWISNVPSYEGNEW 35


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 318 YYSFLQIMDSNYKEVSTRENYGSIKKCSWMPFI 416
           Y +F+Q  D NY +     NY  IK   W P I
Sbjct: 321 YITFVQ--DRNYNDSRYSLNYEKIKSLGWRPQI 351


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 150 KNKNSCCFLLNVHSFVESVFA 212
           K+ NSC +L +V SFVE  F+
Sbjct: 112 KDNNSCVWLNSVKSFVEKQFS 132


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 228 LPCMVVQTHFRQTNEHLTKNSTSFYSY 148
           +P M+V     Q+  HL  N  +FYS+
Sbjct: 119 MPSMIVSAFSHQSGWHLLFNMVAFYSF 145


>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = -1

Query: 158 FILISSIAIREIP*HVLVIPVISMHLFTLCLMINRTLAPCGPVELPLNFTD 6
           F +   I+IR IP  +    +I+   FTL    NR   PC    L LNF D
Sbjct: 99  FKVRKEISIRSIPPELPPFELIATDPFTLEAYTNRIGKPC----LTLNFQD 145


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +2

Query: 536 SEEMESWLSSVIGYGGIPWVFLLPVFTEFIGRKIPFIILCVNSL 667
           S+ +  +L  + G G +P +F   +   + G+ +P +I C+++L
Sbjct: 101 SDNINKFLDFIHGIG-LPEIFHFELTDIYEGKNLPKVIYCIHAL 143


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 211 ANTLSTNE*TFNKKQHEF 158
           A  L+T+E TFNKK HE+
Sbjct: 462 AQYLATDERTFNKKLHEW 479


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 601 ITGFH*IHRTQDTVYYFVCEFISGVC 678
           ++ +H  H+   T Y+F   F++GVC
Sbjct: 210 LSRYHVYHKAPFTFYWFKWLFLTGVC 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,783
Number of Sequences: 5004
Number of extensions: 53350
Number of successful extensions: 163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)