Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20655
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 29 2.6
06_01_0974 + 7541771-7542553,7542666-7542795,7543098-7543645,754... 29 3.4
03_05_0352 + 23395976-23396040,23396220-23396286,23396753-233971... 29 3.4
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 28 6.0
10_08_0977 - 21985149-21985277,21985348-21985722,21985824-219858... 28 6.0
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782... 28 6.0
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631... 28 7.9
04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016 28 7.9
02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537 28 7.9
>03_01_0085 +
690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 477 GAPTVFIPQLRKRQTLQKQSRRKWSHGYH 563
G P V+ P KR QSR KW+ G+H
Sbjct: 133 GCPKVYHPACIKRDEAFFQSRSKWNCGWH 161
>06_01_0974 +
7541771-7542553,7542666-7542795,7543098-7543645,
7544482-7544864,7546670-7546766
Length = 646
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = +3
Query: 345 SNYKEVSTRENYGSIKKCSWMPFIKQFLVCSGVWTIYFTLGMATGAPTVFIPQLRKRQTL 524
S+ +S NY + S+ ++F V GV T A+ A + Q +RQ
Sbjct: 551 SSKYSISDIANYSEESRTSYKWERQKFGV-QGVVTNPLAEPNASFAGNTVVAQEARRQNS 609
Query: 525 QKQSRRKWSHGYHP 566
+ R+W HG HP
Sbjct: 610 AQYKSRRWCHGDHP 623
>03_05_0352 +
23395976-23396040,23396220-23396286,23396753-23397122,
23397229-23397401,23397751-23397996
Length = 306
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 171 NSTSFYSYIFNCNS*NPLTCTRNSSDQYALIYIMLND 61
+ T Y Y+ N +S + + CT S +YA +Y+ D
Sbjct: 204 SETPIYGYVMNNSSIHGIPCTVEISKKYADVYLPFED 240
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 461 PGNGHRSTHGIHTSAQKEANSTEAVSEEMESWLSSVIGY 577
P GH THG +T+ K+ ++T E + +SS GY
Sbjct: 83 PSGGHL-THGYYTAGGKKISATSIYFESLPYKVSSETGY 120
>10_08_0977 -
21985149-21985277,21985348-21985722,21985824-21985874,
21985964-21986189,21986289-21986359,21986430-21986549,
21986641-21986835,21986921-21986985,21987894-21987984,
21988700-21988761,21988854-21988904,21989172-21989273,
21989873-21989980,21990071-21990134,21990246-21990392
Length = 618
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 484 PRYSYLSSERGKLYRSSLGGNGVMAIIRHRI 576
P YS+LSS G Y + L + A+IR RI
Sbjct: 275 PEYSHLSSRMGSEYLAKLLSQHLEAVIRARI 305
>10_05_0011 -
7822847-7822880,7823653-7823754,7823859-7824106,
7824195-7824240,7824368-7825984,7826673-7826797,
7826915-7829083
Length = 1446
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -3
Query: 660 FTHKIINGILRPMNSVKTGNKNTQGIPPYPMTDDSHDSISSETASVEFASF 508
FT+K+ + L + N PP SHD S +++F SF
Sbjct: 361 FTNKMTSPDLEQRQHATLNSMNLHSAPPSAQPSPSHDGSSGTMNNLKFTSF 411
>11_04_0205 +
14860857-14861534,14862585-14862975,14863069-14863170,
14863438-14863682
Length = 471
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 461 PGNGHRSTHGIHTSAQKEANSTEAVSEEMESWLSSVIGY 577
P GH THG +T+ K+ ++T E + +S+ GY
Sbjct: 130 PSGGHL-THGYYTAGGKKISATSIYFESLPYKVSAATGY 167
>04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016
Length = 336
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 615 VKTGNKNTQGIPPYPMTDDSHDSISSETASVE 520
+K G T+ PY DD S+S+ AS++
Sbjct: 197 IKNGGLTTESNYPYAAVDDKFKSVSNSVASIK 228
>02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537
Length = 900
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 455 FHPGN-GHRSTHGIHTSAQKEANSTEAVSEEMESWLSSVIGYGGI 586
FHP G GI A A+ +AV E + S++G+GG+
Sbjct: 150 FHPAACGSDQLVGIEGQANTLADKLKAVDESSNLKVFSIVGFGGL 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,706,984
Number of Sequences: 37544
Number of extensions: 316390
Number of successful extensions: 882
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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