Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20655
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29782| Best HMM Match : RnaseH (HMM E-Value=0.15)                   30   2.0  
SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 29   3.5  
SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)                   29   3.5  
SB_43754| Best HMM Match : Peptidase_M13 (HMM E-Value=6.9e-07)         29   4.6  
SB_20148| Best HMM Match : Cu_bind_like (HMM E-Value=3)                28   8.0  

>SB_29782| Best HMM Match : RnaseH (HMM E-Value=0.15)
          Length = 781

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +2

Query: 452 LFHPGNGHRSTH---GIHTSAQKEANSTEAVSEEMESWLS 562
           +F+PG G+R+ H   G HT+A +  +     S+E E++ S
Sbjct: 739 VFYPGEGYRNVHVIRGYHTAADEYPSHLNLFSDEGETYNS 778


>SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
 Frame = +2

Query: 452 LFHPGNGHRSTH---GIHTSAQKEANSTEAVSEEMESWLS-SVIGY------GGIPWVFL 601
           +F+PG G+R+ H   G  T+A +  +     S+E  ++ S   +GY      GG+ W  L
Sbjct: 232 VFYPGEGYRNVHVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQVGYIRNDDHGGVSWFAL 291

Query: 602 LPV 610
           L V
Sbjct: 292 LKV 294


>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 1640

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +2

Query: 437 WSMDD-LFHPGNGHRSTH---GIHTSAQKEANSTEAVSEEMESWLS-SVIGY 577
           W+ D  +F+PG G+R+ H   G  T+A +  +     S+E E++ S   +GY
Sbjct: 195 WASDVFVFYPGEGYRNVHVIRGYDTAADEYPSHVNLFSDEGETYNSGKQVGY 246


>SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)
          Length = 314

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 563 SVIGYGGIPWVFLLPVFTEFIGRKI 637
           +V+GY  IPW F+LPV   F+  K+
Sbjct: 50  NVLGYH-IPWRFILPVLATFVAYKL 73


>SB_43754| Best HMM Match : Peptidase_M13 (HMM E-Value=6.9e-07)
          Length = 174

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 470 GHRSTHGIHTSAQKEANSTEAVSEEMESW 556
           GH  THG  T+ +K   + E + +  E+W
Sbjct: 63  GHELTHGFDTTGRKYDKNGEEIDKRSEAW 91


>SB_20148| Best HMM Match : Cu_bind_like (HMM E-Value=3)
          Length = 428

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +2

Query: 452 LFHPGNGHRSTH---GIHTSAQKEANSTEAVSEEMESWLS-SVIGY 577
           +F+PG G+R+ H   G  T+A +  N     S+E  +++S   +GY
Sbjct: 181 VFYPGEGYRNVHVIRGHDTAADEYPNHLNLFSDEGGTYISGKQVGY 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,048,686
Number of Sequences: 59808
Number of extensions: 385643
Number of successful extensions: 1161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)