Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20655
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical pr...    31   0.76 
U64836-6|AAG24056.2|  201|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81487-3|CAB03997.2|  345|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U80027-20|AAC48113.2|  400|Caenorhabditis elegans Hypothetical p...    29   4.1  
U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    29   4.1  
AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF024499-7|AAB70358.3|  733|Caenorhabditis elegans Hypothetical ...    28   7.1  
U80029-19|AAB37598.1|  139|Caenorhabditis elegans Hypothetical p...    27   9.4  
U28941-9|AAC71106.1|  452|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF003385-5|AAB54245.1|  494|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical
           protein T21C9.7 protein.
          Length = 303

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 405 MPFIKQFLVCSGVWTI-YFTLGMATGAPTVFIPQLRKRQTLQKQS 536
           MPF+   L  +  WTI YF+  + T   T   P LR R  +   S
Sbjct: 257 MPFVSDILTFNHPWTIMYFSTKVRTSMATDHFPSLRSRAVMVTSS 301


>U64836-6|AAG24056.2|  201|Caenorhabditis elegans Hypothetical
           protein F10G2.1 protein.
          Length = 201

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 111 YMSRDFTNCN*RYKNKNSCCF 173
           Y+++DF +C+ + +NKNS C+
Sbjct: 108 YVAKDFADCSEKLENKNSTCY 128


>Z81487-3|CAB03997.2|  345|Caenorhabditis elegans Hypothetical
           protein C54E10.4 protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 527 EAVSEEMESWLSSVIGYGGIPWVFLLPVFTEFIG 628
           EA + ++ +W+  V G GGI WVF++  +  ++G
Sbjct: 183 EAYNWQVNTWIP-VAGLGGIGWVFVVASYCLYLG 215


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical
           protein R09E10.7 protein.
          Length = 1717

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +2

Query: 404 DAVYQAVPRL*WSMDDLFHPGNGHRSTHGIH----TSAQKEANSTEAVSEEM 547
           DA+  A+  + + +D L    N  R+ HG+     TS Q  ++S+  VS+++
Sbjct: 727 DAIQHALQVIEYLIDSLTEQSNDFRNVHGVENEPSTSKQSSSSSSSTVSDDV 778


>U80027-20|AAC48113.2|  400|Caenorhabditis elegans Hypothetical
           protein T28A11.2a protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/56 (28%), Positives = 32/56 (57%)
 Frame = +3

Query: 6   VRKIQRQLNRPARRQRTVNH*A*CK*VHTDHWNYEYMSRDFTNCN*RYKNKNSCCF 173
           +R +Q     PAR+Q+        K + T   +  ++S++FT+C+ + ++KNS C+
Sbjct: 276 LRTLQCGPEHPARKQKL-------KLIRTYCESIVFISKNFTDCDAKLESKNSTCY 324


>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 678 TYATNEFTHKIINGILRPMNSVKTGNKNTQGIPPYP 571
           T A NE T K +N ++       +  K+ QG+PP P
Sbjct: 603 TDALNEITIKCLNLMMMDTQEAASRTKDEQGLPPKP 638


>AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical
           protein Y49F6C.6 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 470 HSQGEINRPYSTTNEELLDKRHPRTLF 390
           +S   + RPY TTN +L+  + P+T F
Sbjct: 89  YSTTTVPRPYPTTNPKLISLQQPKTPF 115


>AF024499-7|AAB70358.3|  733|Caenorhabditis elegans Hypothetical
           protein F42G2.6 protein.
          Length = 733

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
 Frame = +3

Query: 381 GSIKKCSWMPFIKQF-LVCSGVWTIYFTLGMATGAPTVFIPQLRKRQTLQKQSRRKWSHG 557
           GS+K C W+  I ++ ++    W + F              Q+ +++ L    +RK    
Sbjct: 331 GSVKPCVWIEKISEYQIIDQETWRLKFENSRVMAIDAEAREQVHRQRKLNSNEKRKEEEA 390

Query: 558 YHPS*DM---AGYLGYSYYRFSLNSSDAR 635
            +    +      L    YR   NSSD R
Sbjct: 391 ENEQEKLFKEMAELEIQNYRILPNSSDKR 419


>U80029-19|AAB37598.1|  139|Caenorhabditis elegans Hypothetical
           protein T20D4.19 protein.
          Length = 139

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 111 YMSRDFTNCN*RYKNKNSCCF 173
           Y S+DF  C+ + +N+NS C+
Sbjct: 110 YDSKDFAECSEKLENENSICY 130


>U28941-9|AAC71106.1|  452|Caenorhabditis elegans Hypothetical
           protein F31D5.1 protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -1

Query: 176 QKTARVFILISSIAIREIP*HVLVIPVISMHLFTLCLMINRTLAPCGPVELPLNFTD 6
           Q    +F+ I    IR+   HVL++  + +H+  L LMI+ +     P + PL+ TD
Sbjct: 276 QVIGSIFVAIIGNKIRKFGQHVLILGALILHVI-LFLMISLSF----PNDAPLHHTD 327


>AF003385-5|AAB54245.1|  494|Caenorhabditis elegans Hypothetical
           protein R08F11.3 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -1

Query: 113 VLVIPVISMHLFTLCLMINRTLAPCGPVELPL 18
           VLV+  IS++LF L     R L P GP  LPL
Sbjct: 6   VLVLTGISIYLFHLLYWKRRNLPP-GPTPLPL 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,869,042
Number of Sequences: 27780
Number of extensions: 294104
Number of successful extensions: 833
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)