Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20655
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01400.1 68418.m00053 expressed protein contains low similari...    30   1.2  
At5g27060.1 68418.m03229 disease resistance family protein conta...    29   3.8  
At3g11010.1 68416.m01329 disease resistance family protein / LRR...    29   3.8  
At4g21650.1 68417.m03137 subtilase family protein contains Pfam ...    28   5.0  
At1g65330.1 68414.m07408 MADS-box family protein similar to MADS...    28   5.0  

>At5g01400.1 68418.m00053 expressed protein contains low similarity
           to symplekin SP:Q92797 from [Homo sapiens]
          Length = 1467

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +1

Query: 355 KKLVHVRIMEALK--SVRG---CRLXXXXXFVVEYGRFISPWEWPQEHPRYSYLSSERGK 519
           +KLV +RI+EA K  S+ G    R        VE+   + PW+  QEH    YL+ E  +
Sbjct: 665 QKLVFLRIVEAYKQISMSGGSQLRFSLLAHLGVEFPSELDPWKILQEHVLSDYLNHEGHE 724

Query: 520 L 522
           L
Sbjct: 725 L 725


>At5g27060.1 68418.m03229 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 957

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 491 IHTSA---QKEANSTEAVSEEMESWLSSVIGYG 580
           IHT A   Q E   TE   E++ SW+++ IG+G
Sbjct: 886 IHTPASHQQFETPETEEEDEDLISWIAAAIGFG 918


>At3g11010.1 68416.m01329 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to disease
           resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 894

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 491 IHTSA---QKEANSTEAVSEEMESWLSSVIGYG 580
           IHT A   Q E   TE   E++ SW+++ IG+G
Sbjct: 823 IHTPASHQQFETPQTEEEDEDLISWIAAAIGFG 855


>At4g21650.1 68417.m03137 subtilase family protein contains Pfam
           domain, PF00082: Subtilase family; contains Pfam domain,
           PF02225: protease associated (PA) domain
          Length = 766

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 490 YSYLSSERGKLYRSSLGGNGVMAIIRHRIWRDTLGI 597
           +S LSS +G L+ ++LG   ++ +I   IW ++  +
Sbjct: 137 FSSLSSVKGLLHDTNLGSEAIIGVIDSGIWPESKAV 172


>At1g65330.1 68414.m07408 MADS-box family protein similar to
           MADS-box transcription factor GI:6580941 from [Picea
           abies]
          Length = 279

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 666 NEFTHKIINGILRPMNSVKTGNKNTQGIPP 577
           N F +K +NG++R +  +K   +++  +PP
Sbjct: 138 NVFLNKYLNGVIRRVEILKENGESSSSVPP 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,744,112
Number of Sequences: 28952
Number of extensions: 263188
Number of successful extensions: 742
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)