Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20653
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)                  110   1e-24
SB_27966| Best HMM Match : RCSD (HMM E-Value=0.11)                     34   0.13 
SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)                   31   1.2  
SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16)                29   2.7  
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_29383| Best HMM Match : Gamma-thionin (HMM E-Value=7.5)             29   4.8  
SB_22229| Best HMM Match : Arm (HMM E-Value=0)                         28   6.3  

>SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 596

 Score =  110 bits (264), Expect = 1e-24
 Identities = 55/66 (83%), Positives = 59/66 (89%)
 Frame = +3

Query: 213 REKEGGR*KGYSIHTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMA 392
           R+KE  + K  +  TVGKDVS+LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMA
Sbjct: 29  RKKEAVK-KVIASMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMA 87

Query: 393 VNTFVK 410
           VNTFVK
Sbjct: 88  VNTFVK 93



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 28/45 (62%), Positives = 31/45 (68%)
 Frame = +1

Query: 133 MTDSKYFTTTKKGEIFELKSELNSDXXXXXXXXXXXXIASIQLEK 267
           MTDSKYFTTTKKGEIFELK+ELNSD            IAS+ + K
Sbjct: 1   MTDSKYFTTTKKGEIFELKAELNSDKKDRKKEAVKKVIASMTVGK 45


>SB_27966| Best HMM Match : RCSD (HMM E-Value=0.11)
          Length = 652

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 21/46 (45%), Positives = 25/46 (54%)
 Frame = +1

Query: 511 KVPER*RSLCPENCSRVRRKVI*YLFKHG*RSGLLRSTKRSVERFE 648
           K+PE   SLC ENC+    K + YL      S L  STKRS+ R E
Sbjct: 48  KIPEH-TSLCLENCTFRHCKAVRYLMATN-DSNLSTSTKRSISRLE 91


>SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 949

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/53 (26%), Positives = 31/53 (58%)
 Frame = +2

Query: 524 DEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANAVAAL 682
           D    V++ AA+CV KL+ ++ +++    +  ++  LL+D +  VV +A + +
Sbjct: 172 DTSDSVKQCAALCVLKLFRLNENLLPPGEWTSRIVQLLNDKHLGVVTSATSLI 224


>SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16)
          Length = 266

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 336 VYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEY 494
           VY  + +  K   D+A+ A N   K    S+P  RA  +R +  +  D++ E+
Sbjct: 36  VYCKVPDSGKEHVDLAVAAANAAFKSWSVSSPAYRAERLRKLADLIEDRLEEF 88


>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1130

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 431 IDSSFGCTDYGMHSS--GQDYRISMRTIRK-CLKDEDPYVRKTAAVCVAKLYDISSSMVE 601
           ++  + C+  G  +S   QD  I +R   K  L+D     R T A+C  KLY  S  +  
Sbjct: 386 VNLMYKCSSVGPPTSHSDQDEPIEVRHRHKRALQDSARAKRVTRAICRDKLY--SCKLWA 443

Query: 602 DQGFLDQLKDLLSDSNP 652
            QGF +  KD +    P
Sbjct: 444 KQGFCEIRKDFMPTECP 460


>SB_29383| Best HMM Match : Gamma-thionin (HMM E-Value=7.5)
          Length = 198

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 488 CNLVHSNASHSPYSQSSNQWIGILTVL 408
           CN  +S  SH      S++W+GIL  L
Sbjct: 154 CNCQNSERSHGSLQSLSSEWLGILKAL 180


>SB_22229| Best HMM Match : Arm (HMM E-Value=0)
          Length = 1050

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 279 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVN 398
           +FP V+NC++  +  + K V   +   AK  P++A + VN
Sbjct: 250 IFPAVLNCLKDPDEYVCKNVATLIREIAKHTPELAQLIVN 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,722,739
Number of Sequences: 59808
Number of extensions: 385431
Number of successful extensions: 1055
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)