Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20653
         (696 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    28   0.32 
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    25   2.3  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 27.9 bits (59), Expect = 0.32
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +2

Query: 446 GCTDYGMHSSGQDYRISMRTIRKCLKDEDPYVRKTAAVC---VAKLYDISSSMVEDQGFL 616
           GC      S+ +D+R    T+   LK E P ++         V +LYD+ S  V++Q   
Sbjct: 567 GCLSAFFVSTQEDWR----TLDALLKREFPDLQNRTIFTGRFVKELYDVRSGCVQEQDGT 622

Query: 617 DQLKDLLSDSNPMVV 661
             L +L+  ++P+V+
Sbjct: 623 HLLMNLIKVNDPVVM 637


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 590 LKRYHITLRRTRLQFSGHKDLHLSGTF 510
           L+R+H+ L     +  GH+ L ++G F
Sbjct: 93  LERFHVMLDNLVAELDGHRPLVIAGDF 119


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,839
Number of Sequences: 2352
Number of extensions: 13196
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)