Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20652
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 163 1e-40
01_05_0762 + 24990915-24990970,24991076-24991592,24991676-249917... 85 4e-17
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 79 4e-15
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67... 33 0.18
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 33 0.32
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 32 0.42
06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641... 31 0.74
10_08_0974 + 21969713-21971914 29 3.9
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 29 3.9
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 163 bits (397), Expect = 1e-40
Identities = 75/86 (87%), Positives = 83/86 (96%)
Frame = +3
Query: 255 TVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPL 434
TVGKDVS+LF DVVNCMQT+NLELKKLVYLYL+NYAKSQPD+AI+AVNTFVKD +D NPL
Sbjct: 132 TVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPL 191
Query: 435 IRALAVRTMGCIRVDKITEYLCEPLE 512
IRALAVRTMGCIRVDKITEYLC+PL+
Sbjct: 192 IRALAVRTMGCIRVDKITEYLCDPLQ 217
Score = 116 bits (278), Expect = 3e-26
Identities = 52/80 (65%), Positives = 71/80 (88%)
Frame = +2
Query: 506 IRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANAVAALS 685
+++CLKD+DPYVRKTAA+CVAKLYDI++ +VED+GFL+ LKDL+SD+NPMVVANAVAAL+
Sbjct: 216 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLEALKDLISDNNPMVVANAVAALA 275
Query: 686 EINEASVSGRPLVEMNAPTI 745
EI ++S RP+ E+ + T+
Sbjct: 276 EIQDSST--RPIFEITSHTL 293
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 139 DSKYFTTTKKGEIFELKSELNS 204
DSKYF+TTKKGEI ELK ELNS
Sbjct: 5 DSKYFSTTKKGEIPELKEELNS 26
>01_05_0762 +
24990915-24990970,24991076-24991592,24991676-24991753,
24993678-24993743,24994819-24994943,24995414-24995612,
24995909-24996137,24996259-24996425,24996526-24996735,
24997245-24997355,24997436-24997612,24997826-24998284,
24998676-24998966
Length = 894
Score = 85.4 bits (202), Expect = 4e-17
Identities = 39/93 (41%), Positives = 60/93 (64%)
Frame = +3
Query: 246 SIHTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDS 425
S T G DVSA F ++V C T ++ LKK+ YLY+ +A++ PD+A++ +N +DC D
Sbjct: 54 SCMTAGIDVSAAFGEMVLCSATSDVVLKKMCYLYVGVHARNHPDLALLTINFLQRDCHDQ 113
Query: 426 NPLIRALAVRTMGCIRVDKITEYLCEPLESA*K 524
+P IR LA+R++ +RV + EYL PL + K
Sbjct: 114 DPTIRGLALRSLCSLRVPNLVEYLVSPLATGLK 146
Score = 35.1 bits (77), Expect = 0.060
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 518 LKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDL-LSDSNPMVV 661
LKD YVR AAV AKLY IS++ D LK L LSD + ++
Sbjct: 145 LKDPSAYVRMIAAVGAAKLYHISATACLDADLPAALKALMLSDPDAQII 193
>01_07_0353 +
42962769-42962972,42963062-42963138,42963571-42963817,
42963907-42964476,42964998-42965171,42965514-42965640,
42965719-42965828,42966707-42966907,42966999-42967966,
42968110-42968358,42968760-42969105
Length = 1090
Score = 79.0 bits (186), Expect = 4e-15
Identities = 36/72 (50%), Positives = 53/72 (73%)
Frame = +3
Query: 261 GKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIR 440
G DV+ FP VV + + +LE+KKLVYLYL++YA+ + + A++++N F KD D NPL+R
Sbjct: 59 GVDVAHFFPQVVKNVASQSLEVKKLVYLYLLHYAEKRQNEALLSINIFQKDLSDINPLVR 118
Query: 441 ALAVRTMGCIRV 476
A A+RTM IR+
Sbjct: 119 AWALRTMAGIRL 130
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +2
Query: 506 IRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANAVAALS 685
++KC +D YVRK AA + KL+D+ E D + L SD++P VV A +
Sbjct: 141 VKKCARDPSAYVRKCAAYALCKLHDLLPD--ETTSLEDTVDVLFSDNSPGVVGATAVAFN 198
Query: 686 EI 691
+
Sbjct: 199 SV 200
>03_01_0084 +
676538-676669,677828-677959,678085-678210,678820-678882,
678964-679061,679133-679340,679859-679930,680016-680108,
680297-680398,680568-680665,681059-681140,681274-681362,
681960-682065,682145-682210,682527-682633,682907-683027,
683226-683411,683490-683789,683887-683967,684061-684225,
684297-684383,684476-684601,684750-684830,684917-684988,
685353-685364
Length = 934
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2
Query: 533 PYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANAVAAL 682
P VRK AA+C+ +LY + +V G+ D++ LL D + V +V +L
Sbjct: 158 PVVRKKAALCLLRLYRKNPDVVNIDGWSDRMAQLL-DERDLGVLTSVMSL 206
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +3
Query: 267 DVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRAL 446
+ + +F V Q+ + L++LVYL + + S D I+ ++ +KD + RA
Sbjct: 66 EATEVFFAVTKLFQSKDAGLRRLVYLMIKELSPSS-DEVIIVTSSLMKDMNSKTDMYRAN 124
Query: 447 AVRTMGCIRVD 479
A+R + C +D
Sbjct: 125 AIRVL-CRIID 134
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 32.3 bits (70), Expect = 0.42
Identities = 26/97 (26%), Positives = 41/97 (42%)
Frame = +2
Query: 449 CTDYGMHSSGQDYRISMRTIRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLK 628
C++ H+ DY +R++RK + E ++ VC + IS Q QLK
Sbjct: 1135 CSEVIKHALYVDYVRVLRSLRKKGRTEQAVLKAVNQVCGLEFSRISDFTKSVQYGQKQLK 1194
Query: 629 DLLSDSNPMVVANAVAALSEINEASVSGRPLVEMNAP 739
LL D + A+ + E S PL+ + AP
Sbjct: 1195 QLL-DGEESLAEFPYASFLQTVETSDDSEPLLSLLAP 1230
>06_01_0844 -
6411121-6411129,6411671-6411796,6411980-6412043,
6412568-6412695,6412855-6412971,6414936-6415475,
6415554-6417344,6418359-6421407,6421765-6421823,
6422738-6422791
Length = 1978
Score = 31.5 bits (68), Expect = 0.74
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +2
Query: 497 MRTIRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLS--DSNPMVVANA 670
MR ++ ED + A C+ +L SSS E + L QL DLL D+ V +
Sbjct: 34 MRMVKNRANVEDEETLSSVAQCIEQLRQGSSSTQEKENSLKQLLDLLETRDTTFGAVGSH 93
Query: 671 VAALSEINEASVSGRPLVEMNAPTI 745
A+ + SG V+M A T+
Sbjct: 94 AQAVPILVSLLRSGSSGVKMLAATV 118
>10_08_0974 + 21969713-21971914
Length = 733
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 641 RSTDLLVDLRSPDLQPCLKRYHITLRRTRLQFS 543
R + L R PD QPC + +H T T Q +
Sbjct: 502 RKLEFLKGDREPDPQPCFRMFHATQAHTNAQMN 534
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 479 QDYRISMRTIRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMV 658
+DY T+R + P + ++C+ L + S + + L ++ LL D NP
Sbjct: 85 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 144
Query: 659 VANAVAA 679
AN+ AA
Sbjct: 145 PANSEAA 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,825,823
Number of Sequences: 37544
Number of extensions: 334439
Number of successful extensions: 795
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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